Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0026 and Rru_A0027 are separated by 6 nucleotides Rru_A0027 and Rru_A0028 are separated by 579 nucleotides
Rru_A0026: Rru_A0026 - hypothetical protein (NCBI), at 30,276 to 31,619
_A0026
Rru_A0027: Rru_A0027 - Monofunctional biosynthetic peptidoglycan transglycosylase (NCBI), at 31,626 to 32,333
_A0027
Rru_A0028: Rru_A0028 - Beta-lactamase-like (NCBI), at 32,913 to 33,752
_A0028
Position (kb)
31
32
33 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 30.640 kb on - strand, within Rru_A0026 at 30.640 kb on - strand, within Rru_A0026 at 30.640 kb on - strand, within Rru_A0026 at 30.834 kb on + strand, within Rru_A0026 at 30.834 kb on + strand, within Rru_A0026 at 30.835 kb on - strand, within Rru_A0026 at 30.891 kb on + strand, within Rru_A0026 at 30.891 kb on + strand, within Rru_A0026 at 30.891 kb on + strand, within Rru_A0026 at 30.892 kb on - strand, within Rru_A0026 at 31.027 kb on - strand, within Rru_A0026 at 31.027 kb on - strand, within Rru_A0026 at 31.027 kb on - strand, within Rru_A0026 at 31.027 kb on - strand, within Rru_A0026 at 31.027 kb on - strand, within Rru_A0026 at 31.027 kb on - strand, within Rru_A0026 at 31.335 kb on + strand, within Rru_A0026 at 31.335 kb on + strand, within Rru_A0026 at 31.336 kb on - strand, within Rru_A0026 at 31.336 kb on - strand, within Rru_A0026 at 31.446 kb on + strand, within Rru_A0026 at 31.446 kb on + strand, within Rru_A0026 at 31.446 kb on + strand, within Rru_A0026 at 31.446 kb on + strand, within Rru_A0026 at 31.446 kb on + strand, within Rru_A0026 at 31.447 kb on - strand, within Rru_A0026 at 31.447 kb on - strand, within Rru_A0026 at 31.447 kb on - strand, within Rru_A0026 at 31.515 kb on + strand at 31.516 kb on - strand at 31.618 kb on - strand at 31.843 kb on + strand, within Rru_A0027 at 31.844 kb on - strand, within Rru_A0027 at 31.901 kb on + strand, within Rru_A0027 at 31.901 kb on + strand, within Rru_A0027 at 31.932 kb on + strand, within Rru_A0027 at 31.933 kb on - strand, within Rru_A0027 at 31.933 kb on - strand, within Rru_A0027 at 31.952 kb on - strand, within Rru_A0027 at 32.040 kb on + strand, within Rru_A0027 at 32.041 kb on - strand, within Rru_A0027 at 32.041 kb on - strand, within Rru_A0027 at 32.041 kb on - strand, within Rru_A0027 at 32.094 kb on + strand, within Rru_A0027 at 32.102 kb on + strand, within Rru_A0027 at 32.103 kb on - strand, within Rru_A0027 at 32.127 kb on + strand, within Rru_A0027 at 32.127 kb on + strand, within Rru_A0027 at 32.127 kb on + strand, within Rru_A0027 at 32.128 kb on - strand, within Rru_A0027 at 32.128 kb on - strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.257 kb on - strand, within Rru_A0027 at 32.257 kb on - strand, within Rru_A0027 at 32.669 kb on - strand at 32.669 kb on - strand at 32.718 kb on + strand at 32.754 kb on - strand at 32.812 kb on - strand at 32.821 kb on + strand at 32.821 kb on + strand at 32.827 kb on + strand at 32.827 kb on + strand at 32.828 kb on - strand at 32.924 kb on - strand at 32.924 kb on - strand at 32.935 kb on + strand at 32.936 kb on - strand at 32.936 kb on - strand at 32.936 kb on - strand at 33.138 kb on + strand, within Rru_A0028 at 33.139 kb on - strand, within Rru_A0028 at 33.185 kb on + strand, within Rru_A0028 at 33.185 kb on + strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 30,640 - Rru_A0026 0.27 -2.9 30,640 - Rru_A0026 0.27 -0.4 30,640 - Rru_A0026 0.27 +2.1 30,834 + Rru_A0026 0.42 -0.6 30,834 + Rru_A0026 0.42 +0.4 30,835 - Rru_A0026 0.42 -0.4 30,891 + Rru_A0026 0.46 -0.8 30,891 + Rru_A0026 0.46 +0.0 30,891 + Rru_A0026 0.46 +1.1 30,892 - Rru_A0026 0.46 -0.6 31,027 - Rru_A0026 0.56 +0.2 31,027 - Rru_A0026 0.56 +0.5 31,027 - Rru_A0026 0.56 -0.7 31,027 - Rru_A0026 0.56 -2.5 31,027 - Rru_A0026 0.56 +0.2 31,027 - Rru_A0026 0.56 -0.2 31,335 + Rru_A0026 0.79 +0.6 31,335 + Rru_A0026 0.79 -2.1 31,336 - Rru_A0026 0.79 +0.5 31,336 - Rru_A0026 0.79 -0.3 31,446 + Rru_A0026 0.87 +0.6 31,446 + Rru_A0026 0.87 +0.4 31,446 + Rru_A0026 0.87 -0.6 31,446 + Rru_A0026 0.87 -0.2 31,446 + Rru_A0026 0.87 +0.3 31,447 - Rru_A0026 0.87 +1.8 31,447 - Rru_A0026 0.87 +0.0 31,447 - Rru_A0026 0.87 +0.6 31,515 + +0.8 31,516 - +0.4 31,618 - -0.2 31,843 + Rru_A0027 0.31 +0.9 31,844 - Rru_A0027 0.31 +0.5 31,901 + Rru_A0027 0.39 +0.0 31,901 + Rru_A0027 0.39 +0.2 31,932 + Rru_A0027 0.43 -1.2 31,933 - Rru_A0027 0.43 +1.2 31,933 - Rru_A0027 0.43 -0.1 31,952 - Rru_A0027 0.46 +0.1 32,040 + Rru_A0027 0.58 -0.4 32,041 - Rru_A0027 0.59 -0.9 32,041 - Rru_A0027 0.59 +0.9 32,041 - Rru_A0027 0.59 -0.0 32,094 + Rru_A0027 0.66 -0.8 32,102 + Rru_A0027 0.67 +0.7 32,103 - Rru_A0027 0.67 +0.7 32,127 + Rru_A0027 0.71 +0.1 32,127 + Rru_A0027 0.71 +0.4 32,127 + Rru_A0027 0.71 -0.9 32,128 - Rru_A0027 0.71 +2.2 32,128 - Rru_A0027 0.71 -2.1 32,256 + Rru_A0027 0.89 -1.9 32,256 + Rru_A0027 0.89 +0.3 32,256 + Rru_A0027 0.89 -0.2 32,256 + Rru_A0027 0.89 +0.2 32,256 + Rru_A0027 0.89 +0.8 32,257 - Rru_A0027 0.89 +0.5 32,257 - Rru_A0027 0.89 -1.5 32,669 - -1.1 32,669 - +0.9 32,718 + -1.1 32,754 - -1.2 32,812 - -0.6 32,821 + +0.1 32,821 + +0.7 32,827 + +1.2 32,827 + +0.5 32,828 - +0.2 32,924 - +0.4 32,924 - +0.0 32,935 + +0.2 32,936 - +0.1 32,936 - -0.2 32,936 - +0.2 33,138 + Rru_A0028 0.27 +0.3 33,139 - Rru_A0028 0.27 -0.0 33,185 + Rru_A0028 0.32 +0.1 33,185 + Rru_A0028 0.32 -0.1 33,186 - Rru_A0028 0.33 +0.1 33,186 - Rru_A0028 0.33 -0.7 33,186 - Rru_A0028 0.33 -4.1 33,186 - Rru_A0028 0.33 -0.7 33,186 - Rru_A0028 0.33 +0.8
Or see this region's nucleotide sequence