Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0027

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0026 and Rru_A0027 are separated by 6 nucleotidesRru_A0027 and Rru_A0028 are separated by 579 nucleotides Rru_A0026: Rru_A0026 - hypothetical protein (NCBI), at 30,276 to 31,619 _A0026 Rru_A0027: Rru_A0027 - Monofunctional biosynthetic peptidoglycan transglycosylase (NCBI), at 31,626 to 32,333 _A0027 Rru_A0028: Rru_A0028 - Beta-lactamase-like (NCBI), at 32,913 to 33,752 _A0028 Position (kb) 31 32 33Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 30.640 kb on - strand, within Rru_A0026at 30.640 kb on - strand, within Rru_A0026at 30.640 kb on - strand, within Rru_A0026at 30.834 kb on + strand, within Rru_A0026at 30.834 kb on + strand, within Rru_A0026at 30.835 kb on - strand, within Rru_A0026at 30.891 kb on + strand, within Rru_A0026at 30.891 kb on + strand, within Rru_A0026at 30.891 kb on + strand, within Rru_A0026at 30.892 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.335 kb on + strand, within Rru_A0026at 31.335 kb on + strand, within Rru_A0026at 31.336 kb on - strand, within Rru_A0026at 31.336 kb on - strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.447 kb on - strand, within Rru_A0026at 31.447 kb on - strand, within Rru_A0026at 31.447 kb on - strand, within Rru_A0026at 31.515 kb on + strandat 31.516 kb on - strandat 31.618 kb on - strandat 31.843 kb on + strand, within Rru_A0027at 31.844 kb on - strand, within Rru_A0027at 31.901 kb on + strand, within Rru_A0027at 31.901 kb on + strand, within Rru_A0027at 31.932 kb on + strand, within Rru_A0027at 31.933 kb on - strand, within Rru_A0027at 31.933 kb on - strand, within Rru_A0027at 31.952 kb on - strand, within Rru_A0027at 32.040 kb on + strand, within Rru_A0027at 32.041 kb on - strand, within Rru_A0027at 32.041 kb on - strand, within Rru_A0027at 32.041 kb on - strand, within Rru_A0027at 32.094 kb on + strand, within Rru_A0027at 32.102 kb on + strand, within Rru_A0027at 32.103 kb on - strand, within Rru_A0027at 32.127 kb on + strand, within Rru_A0027at 32.127 kb on + strand, within Rru_A0027at 32.127 kb on + strand, within Rru_A0027at 32.128 kb on - strand, within Rru_A0027at 32.128 kb on - strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.257 kb on - strand, within Rru_A0027at 32.257 kb on - strand, within Rru_A0027at 32.669 kb on - strandat 32.669 kb on - strandat 32.718 kb on + strandat 32.754 kb on - strandat 32.812 kb on - strandat 32.821 kb on + strandat 32.821 kb on + strandat 32.827 kb on + strandat 32.827 kb on + strandat 32.828 kb on - strandat 32.924 kb on - strandat 32.924 kb on - strandat 32.935 kb on + strandat 32.936 kb on - strandat 32.936 kb on - strandat 32.936 kb on - strandat 33.138 kb on + strand, within Rru_A0028at 33.139 kb on - strand, within Rru_A0028at 33.185 kb on + strand, within Rru_A0028at 33.185 kb on + strand, within Rru_A0028at 33.186 kb on - strand, within Rru_A0028at 33.186 kb on - strand, within Rru_A0028at 33.186 kb on - strand, within Rru_A0028at 33.186 kb on - strand, within Rru_A0028at 33.186 kb on - strand, within Rru_A0028

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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30,640 - Rru_A0026 0.27 -2.9
30,640 - Rru_A0026 0.27 -0.4
30,640 - Rru_A0026 0.27 +2.1
30,834 + Rru_A0026 0.42 -0.6
30,834 + Rru_A0026 0.42 +0.4
30,835 - Rru_A0026 0.42 -0.4
30,891 + Rru_A0026 0.46 -0.8
30,891 + Rru_A0026 0.46 +0.0
30,891 + Rru_A0026 0.46 +1.1
30,892 - Rru_A0026 0.46 -0.6
31,027 - Rru_A0026 0.56 +0.2
31,027 - Rru_A0026 0.56 +0.5
31,027 - Rru_A0026 0.56 -0.7
31,027 - Rru_A0026 0.56 -2.5
31,027 - Rru_A0026 0.56 +0.2
31,027 - Rru_A0026 0.56 -0.2
31,335 + Rru_A0026 0.79 +0.6
31,335 + Rru_A0026 0.79 -2.1
31,336 - Rru_A0026 0.79 +0.5
31,336 - Rru_A0026 0.79 -0.3
31,446 + Rru_A0026 0.87 +0.6
31,446 + Rru_A0026 0.87 +0.4
31,446 + Rru_A0026 0.87 -0.6
31,446 + Rru_A0026 0.87 -0.2
31,446 + Rru_A0026 0.87 +0.3
31,447 - Rru_A0026 0.87 +1.8
31,447 - Rru_A0026 0.87 +0.0
31,447 - Rru_A0026 0.87 +0.6
31,515 + +0.8
31,516 - +0.4
31,618 - -0.2
31,843 + Rru_A0027 0.31 +0.9
31,844 - Rru_A0027 0.31 +0.5
31,901 + Rru_A0027 0.39 +0.0
31,901 + Rru_A0027 0.39 +0.2
31,932 + Rru_A0027 0.43 -1.2
31,933 - Rru_A0027 0.43 +1.2
31,933 - Rru_A0027 0.43 -0.1
31,952 - Rru_A0027 0.46 +0.1
32,040 + Rru_A0027 0.58 -0.4
32,041 - Rru_A0027 0.59 -0.9
32,041 - Rru_A0027 0.59 +0.9
32,041 - Rru_A0027 0.59 -0.0
32,094 + Rru_A0027 0.66 -0.8
32,102 + Rru_A0027 0.67 +0.7
32,103 - Rru_A0027 0.67 +0.7
32,127 + Rru_A0027 0.71 +0.1
32,127 + Rru_A0027 0.71 +0.4
32,127 + Rru_A0027 0.71 -0.9
32,128 - Rru_A0027 0.71 +2.2
32,128 - Rru_A0027 0.71 -2.1
32,256 + Rru_A0027 0.89 -1.9
32,256 + Rru_A0027 0.89 +0.3
32,256 + Rru_A0027 0.89 -0.2
32,256 + Rru_A0027 0.89 +0.2
32,256 + Rru_A0027 0.89 +0.8
32,257 - Rru_A0027 0.89 +0.5
32,257 - Rru_A0027 0.89 -1.5
32,669 - -1.1
32,669 - +0.9
32,718 + -1.1
32,754 - -1.2
32,812 - -0.6
32,821 + +0.1
32,821 + +0.7
32,827 + +1.2
32,827 + +0.5
32,828 - +0.2
32,924 - +0.4
32,924 - +0.0
32,935 + +0.2
32,936 - +0.1
32,936 - -0.2
32,936 - +0.2
33,138 + Rru_A0028 0.27 +0.3
33,139 - Rru_A0028 0.27 -0.0
33,185 + Rru_A0028 0.32 +0.1
33,185 + Rru_A0028 0.32 -0.1
33,186 - Rru_A0028 0.33 +0.1
33,186 - Rru_A0028 0.33 -0.7
33,186 - Rru_A0028 0.33 -4.1
33,186 - Rru_A0028 0.33 -0.7
33,186 - Rru_A0028 0.33 +0.8

Or see this region's nucleotide sequence