Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0016

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0014 and Rru_B0015 are separated by 27 nucleotidesRru_B0015 and Rru_B0016 are separated by 166 nucleotidesRru_B0016 and Rru_B0017 are separated by 349 nucleotides Rru_B0014: Rru_B0014 - Transposase, mutator type (NCBI), at 14,096 to 15,022 _B0014 Rru_B0015: Rru_B0015 - putative fragment of transposase protein (NCBI), at 15,050 to 15,301 _B0015 Rru_B0016: Rru_B0016 - Phage integrase (NCBI), at 15,468 to 16,091 _B0016 Rru_B0017: Rru_B0017 - Transcriptional Regulator, LysR family (NCBI), at 16,441 to 17,346 _B0017 Position (kb) 15 16 17Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 15.442 kb on + strandat 15.442 kb on + strandat 15.442 kb on + strandat 15.442 kb on + strandat 15.516 kb on + strandat 15.516 kb on + strandat 15.517 kb on - strandat 15.546 kb on - strand, within Rru_B0016at 15.546 kb on - strand, within Rru_B0016at 15.609 kb on + strand, within Rru_B0016at 15.610 kb on - strand, within Rru_B0016at 15.786 kb on + strand, within Rru_B0016at 15.786 kb on + strand, within Rru_B0016at 15.787 kb on - strand, within Rru_B0016at 15.787 kb on - strand, within Rru_B0016at 15.787 kb on - strand, within Rru_B0016at 15.960 kb on + strand, within Rru_B0016at 15.961 kb on - strand, within Rru_B0016at 15.961 kb on - strand, within Rru_B0016at 15.977 kb on - strand, within Rru_B0016at 15.978 kb on + strand, within Rru_B0016at 15.978 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.986 kb on - strand, within Rru_B0016at 15.995 kb on + strand, within Rru_B0016at 16.093 kb on - strandat 16.093 kb on - strandat 16.094 kb on + strandat 16.094 kb on + strandat 16.094 kb on + strandat 16.095 kb on - strandat 16.096 kb on + strandat 16.096 kb on + strandat 16.096 kb on + strandat 16.096 kb on + strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.129 kb on + strandat 16.129 kb on + strandat 16.231 kb on - strandat 16.304 kb on + strandat 16.304 kb on + strandat 16.361 kb on - strandat 16.361 kb on - strandat 16.361 kb on - strandat 16.361 kb on - strandat 16.415 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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15,442 + -0.6
15,442 + -2.9
15,442 + -1.3
15,442 + +0.3
15,516 + -0.9
15,516 + -0.2
15,517 - -1.7
15,546 - Rru_B0016 0.12 -0.4
15,546 - Rru_B0016 0.12 -3.2
15,609 + Rru_B0016 0.23 -0.5
15,610 - Rru_B0016 0.23 -0.8
15,786 + Rru_B0016 0.51 -1.8
15,786 + Rru_B0016 0.51 -0.3
15,787 - Rru_B0016 0.51 +0.8
15,787 - Rru_B0016 0.51 -0.7
15,787 - Rru_B0016 0.51 +0.4
15,960 + Rru_B0016 0.79 -0.8
15,961 - Rru_B0016 0.79 -1.5
15,961 - Rru_B0016 0.79 -1.9
15,977 - Rru_B0016 0.82 -0.3
15,978 + Rru_B0016 0.82 +0.5
15,978 + Rru_B0016 0.82 +1.2
15,985 + Rru_B0016 0.83 -0.4
15,985 + Rru_B0016 0.83 -1.3
15,985 + Rru_B0016 0.83 -1.0
15,985 + Rru_B0016 0.83 -0.1
15,985 + Rru_B0016 0.83 -0.8
15,986 - Rru_B0016 0.83 +1.2
15,995 + Rru_B0016 0.84 +0.2
16,093 - +0.1
16,093 - +0.4
16,094 + -0.3
16,094 + -1.8
16,094 + -1.5
16,095 - +0.0
16,096 + -0.6
16,096 + -0.9
16,096 + -1.6
16,096 + -0.2
16,097 - -0.4
16,097 - -0.3
16,097 - +0.3
16,097 - -1.6
16,097 - -2.0
16,097 - -0.6
16,097 - +0.6
16,097 - +0.9
16,097 - +2.2
16,097 - +0.0
16,129 + +0.4
16,129 + -4.1
16,231 - -0.7
16,304 + +0.3
16,304 + +0.3
16,361 - -3.0
16,361 - +0.5
16,361 - -1.2
16,361 - -2.2
16,415 + +0.5

Or see this region's nucleotide sequence