Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03247 and SMc03248 are separated by 860 nucleotides SMc03248 and SMc03249 overlap by 4 nucleotides SMc03249 and SMc03751 are separated by 76 nucleotides SMc03751 and SMc03250 overlap by 20 nucleotides
SMc03247: SMc03247 - integrase/recombinase, at 3,360,319 to 3,361,038
SMc03247
SMc03248: SMc03248 - transposase, at 3,361,899 to 3,362,729
SMc03248
SMc03249: SMc03249 - hypothetical protein, at 3,362,726 to 3,362,983
SMc03249
SMc03751: SMc03751 - hypothetical protein, at 3,363,060 to 3,363,509
SMc03751
SMc03250: SMc03250 - hypothetical protein, at 3,363,490 to 3,363,951
SMc03250
Position (kb)
3361
3362
3363 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3360.919 kb on + strand, within SMc03247 at 3360.920 kb on - strand, within SMc03247 at 3361.036 kb on + strand at 3361.037 kb on - strand at 3361.037 kb on - strand at 3361.037 kb on - strand at 3361.042 kb on + strand at 3361.043 kb on - strand at 3361.047 kb on - strand at 3361.047 kb on - strand at 3361.047 kb on - strand at 3361.049 kb on + strand at 3361.049 kb on + strand at 3361.050 kb on - strand at 3361.110 kb on + strand at 3361.110 kb on + strand at 3361.110 kb on + strand at 3361.111 kb on - strand at 3361.111 kb on - strand at 3361.138 kb on - strand at 3361.138 kb on - strand at 3361.153 kb on + strand at 3361.154 kb on - strand at 3361.154 kb on - strand at 3361.154 kb on - strand at 3361.158 kb on + strand at 3361.159 kb on + strand at 3361.160 kb on - strand at 3361.162 kb on - strand at 3361.202 kb on + strand at 3361.202 kb on + strand at 3361.203 kb on - strand at 3361.203 kb on - strand at 3361.217 kb on + strand at 3361.217 kb on + strand at 3361.218 kb on - strand at 3361.218 kb on - strand at 3361.245 kb on - strand at 3361.599 kb on + strand at 3361.599 kb on + strand at 3361.599 kb on + strand at 3361.900 kb on + strand at 3361.901 kb on - strand at 3361.936 kb on + strand at 3361.936 kb on + strand at 3361.937 kb on - strand at 3361.991 kb on - strand, within SMc03248 at 3361.991 kb on - strand, within SMc03248 at 3362.053 kb on + strand, within SMc03248 at 3362.066 kb on - strand, within SMc03248 at 3362.066 kb on - strand, within SMc03248 at 3362.335 kb on + strand, within SMc03248 at 3362.335 kb on + strand, within SMc03248 at 3362.335 kb on + strand, within SMc03248 at 3362.360 kb on + strand, within SMc03248 at 3362.360 kb on + strand, within SMc03248 at 3362.362 kb on + strand, within SMc03248 at 3362.362 kb on + strand, within SMc03248 at 3362.362 kb on + strand, within SMc03248 at 3362.363 kb on - strand, within SMc03248 at 3362.363 kb on - strand, within SMc03248 at 3362.363 kb on - strand, within SMc03248 at 3362.422 kb on + strand, within SMc03248 at 3362.428 kb on + strand, within SMc03248 at 3362.429 kb on - strand, within SMc03248 at 3362.429 kb on - strand, within SMc03248 at 3362.431 kb on - strand, within SMc03248 at 3362.473 kb on + strand, within SMc03248 at 3362.473 kb on + strand, within SMc03248 at 3362.474 kb on - strand, within SMc03248 at 3362.654 kb on - strand at 3362.654 kb on - strand at 3362.814 kb on - strand, within SMc03249 at 3362.814 kb on - strand at 3363.061 kb on + strand at 3363.061 kb on + strand at 3363.062 kb on - strand at 3363.062 kb on - strand at 3363.089 kb on + strand at 3363.090 kb on - strand at 3363.173 kb on + strand, within SMc03751 at 3363.478 kb on + strand at 3363.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,360,919 + SMc03247 0.83 -1.3 3,360,920 - SMc03247 0.83 +0.0 3,361,036 + -1.9 3,361,037 - -0.4 3,361,037 - -1.4 3,361,037 - +0.7 3,361,042 + +1.1 3,361,043 - -0.2 3,361,047 - -0.1 3,361,047 - -1.4 3,361,047 - -0.6 3,361,049 + -1.0 3,361,049 + -0.5 3,361,050 - -2.3 3,361,110 + -0.5 3,361,110 + +1.4 3,361,110 + +2.7 3,361,111 - +0.4 3,361,111 - +0.2 3,361,138 - +1.4 3,361,138 - -0.2 3,361,153 + +1.0 3,361,154 - +0.7 3,361,154 - -0.4 3,361,154 - -0.3 3,361,158 + -0.4 3,361,159 + -1.0 3,361,160 - -0.4 3,361,162 - +0.3 3,361,202 + -0.1 3,361,202 + -0.3 3,361,203 - +1.2 3,361,203 - -0.6 3,361,217 + -0.7 3,361,217 + +0.2 3,361,218 - +0.6 3,361,218 - -0.4 3,361,245 - +0.3 3,361,599 + +0.2 3,361,599 + +1.4 3,361,599 + -0.2 3,361,900 + -0.9 3,361,901 - +0.3 3,361,936 + +0.3 3,361,936 + +0.0 3,361,937 - +0.2 3,361,991 - SMc03248 0.11 -1.8 3,361,991 - SMc03248 0.11 -0.4 3,362,053 + SMc03248 0.19 +0.3 3,362,066 - SMc03248 0.20 +2.4 3,362,066 - SMc03248 0.20 -1.9 3,362,335 + SMc03248 0.52 -0.3 3,362,335 + SMc03248 0.52 +3.7 3,362,335 + SMc03248 0.52 -0.5 3,362,360 + SMc03248 0.55 +0.4 3,362,360 + SMc03248 0.55 +1.5 3,362,362 + SMc03248 0.56 +0.9 3,362,362 + SMc03248 0.56 +0.3 3,362,362 + SMc03248 0.56 -0.2 3,362,363 - SMc03248 0.56 -0.1 3,362,363 - SMc03248 0.56 +0.2 3,362,363 - SMc03248 0.56 -0.2 3,362,422 + SMc03248 0.63 +0.5 3,362,428 + SMc03248 0.64 +1.7 3,362,429 - SMc03248 0.64 -0.1 3,362,429 - SMc03248 0.64 +0.9 3,362,431 - SMc03248 0.64 -0.5 3,362,473 + SMc03248 0.69 +2.6 3,362,473 + SMc03248 0.69 -0.5 3,362,474 - SMc03248 0.69 +0.8 3,362,654 - -0.3 3,362,654 - +0.1 3,362,814 - SMc03249 0.34 +0.0 3,362,814 - +1.7 3,363,061 + -0.5 3,363,061 + +0.2 3,363,062 - -1.5 3,363,062 - -0.1 3,363,089 + +0.1 3,363,090 - -0.1 3,363,173 + SMc03751 0.25 -0.0 3,363,478 + -0.6 3,363,511 - +0.1
Or see this region's nucleotide sequence