Strain Fitness in Sinorhizobium meliloti 1021 around SMc03248

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03247 and SMc03248 are separated by 860 nucleotidesSMc03248 and SMc03249 overlap by 4 nucleotidesSMc03249 and SMc03751 are separated by 76 nucleotidesSMc03751 and SMc03250 overlap by 20 nucleotides SMc03247: SMc03247 - integrase/recombinase, at 3,360,319 to 3,361,038 SMc03247 SMc03248: SMc03248 - transposase, at 3,361,899 to 3,362,729 SMc03248 SMc03249: SMc03249 - hypothetical protein, at 3,362,726 to 3,362,983 SMc03249 SMc03751: SMc03751 - hypothetical protein, at 3,363,060 to 3,363,509 SMc03751 SMc03250: SMc03250 - hypothetical protein, at 3,363,490 to 3,363,951 SMc03250 Position (kb) 3361 3362 3363Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3360.919 kb on + strand, within SMc03247at 3360.920 kb on - strand, within SMc03247at 3361.036 kb on + strandat 3361.037 kb on - strandat 3361.037 kb on - strandat 3361.037 kb on - strandat 3361.042 kb on + strandat 3361.043 kb on - strandat 3361.047 kb on - strandat 3361.047 kb on - strandat 3361.047 kb on - strandat 3361.049 kb on + strandat 3361.049 kb on + strandat 3361.050 kb on - strandat 3361.110 kb on + strandat 3361.110 kb on + strandat 3361.110 kb on + strandat 3361.111 kb on - strandat 3361.111 kb on - strandat 3361.138 kb on - strandat 3361.138 kb on - strandat 3361.153 kb on + strandat 3361.154 kb on - strandat 3361.154 kb on - strandat 3361.154 kb on - strandat 3361.158 kb on + strandat 3361.159 kb on + strandat 3361.160 kb on - strandat 3361.162 kb on - strandat 3361.202 kb on + strandat 3361.202 kb on + strandat 3361.203 kb on - strandat 3361.203 kb on - strandat 3361.217 kb on + strandat 3361.217 kb on + strandat 3361.218 kb on - strandat 3361.218 kb on - strandat 3361.245 kb on - strandat 3361.599 kb on + strandat 3361.599 kb on + strandat 3361.599 kb on + strandat 3361.900 kb on + strandat 3361.901 kb on - strandat 3361.936 kb on + strandat 3361.936 kb on + strandat 3361.937 kb on - strandat 3361.991 kb on - strand, within SMc03248at 3361.991 kb on - strand, within SMc03248at 3362.053 kb on + strand, within SMc03248at 3362.066 kb on - strand, within SMc03248at 3362.066 kb on - strand, within SMc03248at 3362.335 kb on + strand, within SMc03248at 3362.335 kb on + strand, within SMc03248at 3362.335 kb on + strand, within SMc03248at 3362.360 kb on + strand, within SMc03248at 3362.360 kb on + strand, within SMc03248at 3362.362 kb on + strand, within SMc03248at 3362.362 kb on + strand, within SMc03248at 3362.362 kb on + strand, within SMc03248at 3362.363 kb on - strand, within SMc03248at 3362.363 kb on - strand, within SMc03248at 3362.363 kb on - strand, within SMc03248at 3362.422 kb on + strand, within SMc03248at 3362.428 kb on + strand, within SMc03248at 3362.429 kb on - strand, within SMc03248at 3362.429 kb on - strand, within SMc03248at 3362.431 kb on - strand, within SMc03248at 3362.473 kb on + strand, within SMc03248at 3362.473 kb on + strand, within SMc03248at 3362.474 kb on - strand, within SMc03248at 3362.654 kb on - strandat 3362.654 kb on - strandat 3362.814 kb on - strand, within SMc03249at 3362.814 kb on - strandat 3363.061 kb on + strandat 3363.061 kb on + strandat 3363.062 kb on - strandat 3363.062 kb on - strandat 3363.089 kb on + strandat 3363.090 kb on - strandat 3363.173 kb on + strand, within SMc03751at 3363.478 kb on + strandat 3363.511 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
3,360,919 + SMc03247 0.83 -1.3
3,360,920 - SMc03247 0.83 +0.0
3,361,036 + -1.9
3,361,037 - -0.4
3,361,037 - -1.4
3,361,037 - +0.7
3,361,042 + +1.1
3,361,043 - -0.2
3,361,047 - -0.1
3,361,047 - -1.4
3,361,047 - -0.6
3,361,049 + -1.0
3,361,049 + -0.5
3,361,050 - -2.3
3,361,110 + -0.5
3,361,110 + +1.4
3,361,110 + +2.7
3,361,111 - +0.4
3,361,111 - +0.2
3,361,138 - +1.4
3,361,138 - -0.2
3,361,153 + +1.0
3,361,154 - +0.7
3,361,154 - -0.4
3,361,154 - -0.3
3,361,158 + -0.4
3,361,159 + -1.0
3,361,160 - -0.4
3,361,162 - +0.3
3,361,202 + -0.1
3,361,202 + -0.3
3,361,203 - +1.2
3,361,203 - -0.6
3,361,217 + -0.7
3,361,217 + +0.2
3,361,218 - +0.6
3,361,218 - -0.4
3,361,245 - +0.3
3,361,599 + +0.2
3,361,599 + +1.4
3,361,599 + -0.2
3,361,900 + -0.9
3,361,901 - +0.3
3,361,936 + +0.3
3,361,936 + +0.0
3,361,937 - +0.2
3,361,991 - SMc03248 0.11 -1.8
3,361,991 - SMc03248 0.11 -0.4
3,362,053 + SMc03248 0.19 +0.3
3,362,066 - SMc03248 0.20 +2.4
3,362,066 - SMc03248 0.20 -1.9
3,362,335 + SMc03248 0.52 -0.3
3,362,335 + SMc03248 0.52 +3.7
3,362,335 + SMc03248 0.52 -0.5
3,362,360 + SMc03248 0.55 +0.4
3,362,360 + SMc03248 0.55 +1.5
3,362,362 + SMc03248 0.56 +0.9
3,362,362 + SMc03248 0.56 +0.3
3,362,362 + SMc03248 0.56 -0.2
3,362,363 - SMc03248 0.56 -0.1
3,362,363 - SMc03248 0.56 +0.2
3,362,363 - SMc03248 0.56 -0.2
3,362,422 + SMc03248 0.63 +0.5
3,362,428 + SMc03248 0.64 +1.7
3,362,429 - SMc03248 0.64 -0.1
3,362,429 - SMc03248 0.64 +0.9
3,362,431 - SMc03248 0.64 -0.5
3,362,473 + SMc03248 0.69 +2.6
3,362,473 + SMc03248 0.69 -0.5
3,362,474 - SMc03248 0.69 +0.8
3,362,654 - -0.3
3,362,654 - +0.1
3,362,814 - SMc03249 0.34 +0.0
3,362,814 - +1.7
3,363,061 + -0.5
3,363,061 + +0.2
3,363,062 - -1.5
3,363,062 - -0.1
3,363,089 + +0.1
3,363,090 - -0.1
3,363,173 + SMc03751 0.25 -0.0
3,363,478 + -0.6
3,363,511 - +0.1

Or see this region's nucleotide sequence