Strain Fitness in Sinorhizobium meliloti 1021 around SMc02493

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02494 and SMc02493 are separated by 554 nucleotidesSMc02493 and SMc02492 overlap by 4 nucleotides SMc02494: SMc02494 - hypothetical protein, at 3,299,550 to 3,301,079 SMc02494 SMc02493: SMc02493 - hypothetical protein, at 3,301,634 to 3,302,230 SMc02493 SMc02492: SMc02492 - hypothetical protein, at 3,302,227 to 3,303,396 SMc02492 Position (kb) 3301 3302 3303Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3300.691 kb on + strand, within SMc02494at 3300.691 kb on + strand, within SMc02494at 3300.691 kb on + strand, within SMc02494at 3300.692 kb on - strand, within SMc02494at 3300.711 kb on - strand, within SMc02494at 3301.025 kb on + strandat 3301.026 kb on - strandat 3301.186 kb on - strandat 3301.510 kb on - strandat 3301.631 kb on - strandat 3301.778 kb on + strand, within SMc02493at 3301.787 kb on + strand, within SMc02493at 3301.788 kb on - strand, within SMc02493at 3301.788 kb on - strand, within SMc02493at 3301.910 kb on + strand, within SMc02493at 3301.910 kb on + strand, within SMc02493at 3301.911 kb on - strand, within SMc02493at 3301.911 kb on - strand, within SMc02493at 3301.911 kb on - strand, within SMc02493at 3301.911 kb on - strand, within SMc02493at 3301.979 kb on - strand, within SMc02493at 3302.092 kb on + strand, within SMc02493at 3302.121 kb on + strand, within SMc02493at 3302.274 kb on + strandat 3302.275 kb on - strandat 3302.275 kb on - strandat 3302.388 kb on - strand, within SMc02492at 3302.388 kb on - strand, within SMc02492at 3302.485 kb on + strand, within SMc02492at 3302.486 kb on - strand, within SMc02492at 3302.572 kb on + strand, within SMc02492at 3302.632 kb on + strand, within SMc02492at 3302.632 kb on + strand, within SMc02492at 3302.633 kb on - strand, within SMc02492at 3302.887 kb on + strand, within SMc02492at 3302.887 kb on + strand, within SMc02492at 3302.887 kb on + strand, within SMc02492at 3302.888 kb on - strand, within SMc02492at 3302.888 kb on - strand, within SMc02492at 3302.888 kb on - strand, within SMc02492at 3302.888 kb on - strand, within SMc02492at 3302.968 kb on + strand, within SMc02492at 3302.968 kb on + strand, within SMc02492at 3302.969 kb on - strand, within SMc02492at 3303.016 kb on + strand, within SMc02492at 3303.016 kb on + strand, within SMc02492at 3303.017 kb on - strand, within SMc02492at 3303.017 kb on - strand, within SMc02492at 3303.100 kb on + strand, within SMc02492at 3303.101 kb on - strand, within SMc02492at 3303.103 kb on + strand, within SMc02492at 3303.109 kb on + strand, within SMc02492at 3303.109 kb on + strand, within SMc02492at 3303.109 kb on + strand, within SMc02492at 3303.109 kb on + strand, within SMc02492at 3303.109 kb on + strand, within SMc02492at 3303.109 kb on + strand, within SMc02492at 3303.109 kb on + strand, within SMc02492at 3303.110 kb on - strand, within SMc02492at 3303.110 kb on - strand, within SMc02492at 3303.110 kb on - strand, within SMc02492at 3303.110 kb on - strand, within SMc02492at 3303.110 kb on - strand, within SMc02492at 3303.110 kb on - strand, within SMc02492at 3303.110 kb on - strand, within SMc02492at 3303.110 kb on - strand, within SMc02492at 3303.158 kb on + strand, within SMc02492at 3303.205 kb on + strand, within SMc02492at 3303.206 kb on - strand, within SMc02492

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,300,691 + SMc02494 0.75 -0.6
3,300,691 + SMc02494 0.75 -0.2
3,300,691 + SMc02494 0.75 -0.3
3,300,692 - SMc02494 0.75 -0.1
3,300,711 - SMc02494 0.76 -0.1
3,301,025 + -0.3
3,301,026 - -3.0
3,301,186 - -0.2
3,301,510 - -0.6
3,301,631 - -0.3
3,301,778 + SMc02493 0.24 +0.4
3,301,787 + SMc02493 0.26 -1.0
3,301,788 - SMc02493 0.26 -0.2
3,301,788 - SMc02493 0.26 -0.5
3,301,910 + SMc02493 0.46 -0.1
3,301,910 + SMc02493 0.46 +1.0
3,301,911 - SMc02493 0.46 +1.1
3,301,911 - SMc02493 0.46 +0.5
3,301,911 - SMc02493 0.46 +0.3
3,301,911 - SMc02493 0.46 +0.7
3,301,979 - SMc02493 0.58 -1.3
3,302,092 + SMc02493 0.77 -0.2
3,302,121 + SMc02493 0.82 +0.4
3,302,274 + -0.7
3,302,275 - +1.7
3,302,275 - -1.6
3,302,388 - SMc02492 0.14 -0.1
3,302,388 - SMc02492 0.14 -0.3
3,302,485 + SMc02492 0.22 -0.3
3,302,486 - SMc02492 0.22 -0.4
3,302,572 + SMc02492 0.29 -0.2
3,302,632 + SMc02492 0.35 -0.1
3,302,632 + SMc02492 0.35 -0.2
3,302,633 - SMc02492 0.35 -0.4
3,302,887 + SMc02492 0.56 +0.3
3,302,887 + SMc02492 0.56 -0.4
3,302,887 + SMc02492 0.56 -0.9
3,302,888 - SMc02492 0.56 -0.0
3,302,888 - SMc02492 0.56 -0.1
3,302,888 - SMc02492 0.56 -0.7
3,302,888 - SMc02492 0.56 +1.9
3,302,968 + SMc02492 0.63 -0.2
3,302,968 + SMc02492 0.63 -0.3
3,302,969 - SMc02492 0.63 -0.6
3,303,016 + SMc02492 0.67 -1.8
3,303,016 + SMc02492 0.67 +0.1
3,303,017 - SMc02492 0.68 -0.0
3,303,017 - SMc02492 0.68 -0.4
3,303,100 + SMc02492 0.75 +1.2
3,303,101 - SMc02492 0.75 -0.3
3,303,103 + SMc02492 0.75 +2.7
3,303,109 + SMc02492 0.75 -0.5
3,303,109 + SMc02492 0.75 +1.4
3,303,109 + SMc02492 0.75 -0.3
3,303,109 + SMc02492 0.75 +0.0
3,303,109 + SMc02492 0.75 +0.7
3,303,109 + SMc02492 0.75 +0.1
3,303,109 + SMc02492 0.75 +0.8
3,303,110 - SMc02492 0.75 +0.4
3,303,110 - SMc02492 0.75 -0.0
3,303,110 - SMc02492 0.75 -0.6
3,303,110 - SMc02492 0.75 +0.0
3,303,110 - SMc02492 0.75 +1.1
3,303,110 - SMc02492 0.75 -2.3
3,303,110 - SMc02492 0.75 -0.9
3,303,110 - SMc02492 0.75 +1.3
3,303,158 + SMc02492 0.80 +1.0
3,303,205 + SMc02492 0.84 +0.1
3,303,206 - SMc02492 0.84 -0.4

Or see this region's nucleotide sequence