Strain Fitness in Sinorhizobium meliloti 1021 around SMc00564

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00563 and SMc00564 overlap by 4 nucleotidesSMc00564 and SMc00565 are separated by 246 nucleotidesSMc00565 and SMc00566 are separated by 35 nucleotides SMc00563: SMc00563 - transporter, at 1,233,181 to 1,234,776 SMc00563 SMc00564: SMc00564 - transporter, at 1,234,773 to 1,235,861 SMc00564 SMc00565: SMc00565 - 50S ribosomal protein L9, at 1,236,108 to 1,236,683 SMc00565 SMc00566: SMc00566 - hypothetical protein, at 1,236,719 to 1,237,672 SMc00566 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1233.812 kb on - strand, within SMc00563at 1233.812 kb on - strand, within SMc00563at 1233.871 kb on + strand, within SMc00563at 1233.941 kb on + strand, within SMc00563at 1233.941 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.981 kb on - strand, within SMc00563at 1233.981 kb on - strand, within SMc00563at 1233.981 kb on - strand, within SMc00563at 1233.981 kb on - strand, within SMc00563at 1234.099 kb on + strand, within SMc00563at 1234.100 kb on - strand, within SMc00563at 1234.100 kb on - strand, within SMc00563at 1234.237 kb on + strand, within SMc00563at 1234.238 kb on - strand, within SMc00563at 1234.238 kb on - strand, within SMc00563at 1234.239 kb on + strand, within SMc00563at 1234.239 kb on + strand, within SMc00563at 1234.239 kb on + strand, within SMc00563at 1234.239 kb on + strand, within SMc00563at 1234.240 kb on - strand, within SMc00563at 1234.240 kb on - strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.682 kb on + strandat 1234.682 kb on + strandat 1234.683 kb on - strandat 1234.757 kb on + strandat 1234.826 kb on + strandat 1234.826 kb on + strandat 1234.827 kb on - strandat 1234.827 kb on - strandat 1234.923 kb on + strand, within SMc00564at 1234.923 kb on + strand, within SMc00564at 1234.996 kb on - strand, within SMc00564at 1235.005 kb on + strand, within SMc00564at 1235.005 kb on + strand, within SMc00564at 1235.005 kb on + strand, within SMc00564at 1235.006 kb on - strand, within SMc00564at 1235.046 kb on + strand, within SMc00564at 1235.493 kb on + strand, within SMc00564at 1235.493 kb on + strand, within SMc00564at 1235.493 kb on + strand, within SMc00564at 1235.494 kb on - strand, within SMc00564at 1235.494 kb on - strand, within SMc00564at 1235.494 kb on - strand, within SMc00564at 1235.494 kb on - strand, within SMc00564at 1235.494 kb on - strand, within SMc00564at 1235.868 kb on - strandat 1236.030 kb on + strandat 1236.109 kb on + strandat 1236.110 kb on - strandat 1236.110 kb on - strandat 1236.185 kb on - strand, within SMc00565at 1236.823 kb on - strand, within SMc00566

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,233,812 - SMc00563 0.40 -0.2
1,233,812 - SMc00563 0.40 +0.0
1,233,871 + SMc00563 0.43 -0.5
1,233,941 + SMc00563 0.48 -0.1
1,233,941 + SMc00563 0.48 +0.2
1,233,980 + SMc00563 0.50 +0.5
1,233,980 + SMc00563 0.50 +1.2
1,233,980 + SMc00563 0.50 +1.9
1,233,980 + SMc00563 0.50 +1.9
1,233,980 + SMc00563 0.50 +0.2
1,233,981 - SMc00563 0.50 -0.9
1,233,981 - SMc00563 0.50 -0.1
1,233,981 - SMc00563 0.50 -1.4
1,233,981 - SMc00563 0.50 +0.6
1,234,099 + SMc00563 0.58 +0.4
1,234,100 - SMc00563 0.58 -0.2
1,234,100 - SMc00563 0.58 +0.3
1,234,237 + SMc00563 0.66 +0.3
1,234,238 - SMc00563 0.66 -1.0
1,234,238 - SMc00563 0.66 +0.6
1,234,239 + SMc00563 0.66 +0.5
1,234,239 + SMc00563 0.66 +0.4
1,234,239 + SMc00563 0.66 -0.5
1,234,239 + SMc00563 0.66 -0.3
1,234,240 - SMc00563 0.66 +0.1
1,234,240 - SMc00563 0.66 -1.6
1,234,282 + SMc00563 0.69 -0.6
1,234,282 + SMc00563 0.69 +0.3
1,234,282 + SMc00563 0.69 -1.7
1,234,282 + SMc00563 0.69 +0.3
1,234,282 + SMc00563 0.69 +0.1
1,234,282 + SMc00563 0.69 -0.3
1,234,283 - SMc00563 0.69 -1.7
1,234,283 - SMc00563 0.69 +0.8
1,234,283 - SMc00563 0.69 +0.1
1,234,283 - SMc00563 0.69 +1.3
1,234,283 - SMc00563 0.69 -0.9
1,234,283 - SMc00563 0.69 +0.2
1,234,283 - SMc00563 0.69 -0.5
1,234,283 - SMc00563 0.69 +0.3
1,234,378 + SMc00563 0.75 +1.5
1,234,378 + SMc00563 0.75 -0.3
1,234,378 + SMc00563 0.75 +0.5
1,234,378 + SMc00563 0.75 +2.3
1,234,378 + SMc00563 0.75 -0.6
1,234,378 + SMc00563 0.75 +0.1
1,234,682 + +0.5
1,234,682 + +0.7
1,234,683 - -1.6
1,234,757 + +0.5
1,234,826 + -2.8
1,234,826 + +0.3
1,234,827 - +1.9
1,234,827 - -0.1
1,234,923 + SMc00564 0.14 +0.5
1,234,923 + SMc00564 0.14 -0.4
1,234,996 - SMc00564 0.20 -0.9
1,235,005 + SMc00564 0.21 -0.1
1,235,005 + SMc00564 0.21 -0.6
1,235,005 + SMc00564 0.21 -2.2
1,235,006 - SMc00564 0.21 -1.2
1,235,046 + SMc00564 0.25 -1.3
1,235,493 + SMc00564 0.66 -0.2
1,235,493 + SMc00564 0.66 +0.4
1,235,493 + SMc00564 0.66 -0.3
1,235,494 - SMc00564 0.66 +0.0
1,235,494 - SMc00564 0.66 -1.1
1,235,494 - SMc00564 0.66 +1.1
1,235,494 - SMc00564 0.66 -0.5
1,235,494 - SMc00564 0.66 -0.8
1,235,868 - +0.3
1,236,030 + -0.8
1,236,109 + +1.2
1,236,110 - +1.8
1,236,110 - +0.3
1,236,185 - SMc00565 0.13 -0.1
1,236,823 - SMc00566 0.11 -1.3

Or see this region's nucleotide sequence