Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00563 and SMc00564 overlap by 4 nucleotides SMc00564 and SMc00565 are separated by 246 nucleotides SMc00565 and SMc00566 are separated by 35 nucleotides
SMc00563: SMc00563 - transporter, at 1,233,181 to 1,234,776
SMc00563
SMc00564: SMc00564 - transporter, at 1,234,773 to 1,235,861
SMc00564
SMc00565: SMc00565 - 50S ribosomal protein L9, at 1,236,108 to 1,236,683
SMc00565
SMc00566: SMc00566 - hypothetical protein, at 1,236,719 to 1,237,672
SMc00566
Position (kb)
1234
1235
1236 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1233.812 kb on - strand, within SMc00563 at 1233.812 kb on - strand, within SMc00563 at 1233.871 kb on + strand, within SMc00563 at 1233.941 kb on + strand, within SMc00563 at 1233.941 kb on + strand, within SMc00563 at 1233.980 kb on + strand, within SMc00563 at 1233.980 kb on + strand, within SMc00563 at 1233.980 kb on + strand, within SMc00563 at 1233.980 kb on + strand, within SMc00563 at 1233.980 kb on + strand, within SMc00563 at 1233.981 kb on - strand, within SMc00563 at 1233.981 kb on - strand, within SMc00563 at 1233.981 kb on - strand, within SMc00563 at 1233.981 kb on - strand, within SMc00563 at 1234.099 kb on + strand, within SMc00563 at 1234.100 kb on - strand, within SMc00563 at 1234.100 kb on - strand, within SMc00563 at 1234.237 kb on + strand, within SMc00563 at 1234.238 kb on - strand, within SMc00563 at 1234.238 kb on - strand, within SMc00563 at 1234.239 kb on + strand, within SMc00563 at 1234.239 kb on + strand, within SMc00563 at 1234.239 kb on + strand, within SMc00563 at 1234.239 kb on + strand, within SMc00563 at 1234.240 kb on - strand, within SMc00563 at 1234.240 kb on - strand, within SMc00563 at 1234.282 kb on + strand, within SMc00563 at 1234.282 kb on + strand, within SMc00563 at 1234.282 kb on + strand, within SMc00563 at 1234.282 kb on + strand, within SMc00563 at 1234.282 kb on + strand, within SMc00563 at 1234.282 kb on + strand, within SMc00563 at 1234.283 kb on - strand, within SMc00563 at 1234.283 kb on - strand, within SMc00563 at 1234.283 kb on - strand, within SMc00563 at 1234.283 kb on - strand, within SMc00563 at 1234.283 kb on - strand, within SMc00563 at 1234.283 kb on - strand, within SMc00563 at 1234.283 kb on - strand, within SMc00563 at 1234.283 kb on - strand, within SMc00563 at 1234.378 kb on + strand, within SMc00563 at 1234.378 kb on + strand, within SMc00563 at 1234.378 kb on + strand, within SMc00563 at 1234.378 kb on + strand, within SMc00563 at 1234.378 kb on + strand, within SMc00563 at 1234.378 kb on + strand, within SMc00563 at 1234.682 kb on + strand at 1234.682 kb on + strand at 1234.683 kb on - strand at 1234.757 kb on + strand at 1234.826 kb on + strand at 1234.826 kb on + strand at 1234.827 kb on - strand at 1234.827 kb on - strand at 1234.923 kb on + strand, within SMc00564 at 1234.923 kb on + strand, within SMc00564 at 1234.996 kb on - strand, within SMc00564 at 1235.005 kb on + strand, within SMc00564 at 1235.005 kb on + strand, within SMc00564 at 1235.005 kb on + strand, within SMc00564 at 1235.006 kb on - strand, within SMc00564 at 1235.046 kb on + strand, within SMc00564 at 1235.493 kb on + strand, within SMc00564 at 1235.493 kb on + strand, within SMc00564 at 1235.493 kb on + strand, within SMc00564 at 1235.494 kb on - strand, within SMc00564 at 1235.494 kb on - strand, within SMc00564 at 1235.494 kb on - strand, within SMc00564 at 1235.494 kb on - strand, within SMc00564 at 1235.494 kb on - strand, within SMc00564 at 1235.868 kb on - strand at 1236.030 kb on + strand at 1236.109 kb on + strand at 1236.110 kb on - strand at 1236.110 kb on - strand at 1236.185 kb on - strand, within SMc00565 at 1236.823 kb on - strand, within SMc00566
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,233,812 - SMc00563 0.40 -0.2 1,233,812 - SMc00563 0.40 +0.0 1,233,871 + SMc00563 0.43 -0.5 1,233,941 + SMc00563 0.48 -0.1 1,233,941 + SMc00563 0.48 +0.2 1,233,980 + SMc00563 0.50 +0.5 1,233,980 + SMc00563 0.50 +1.2 1,233,980 + SMc00563 0.50 +1.9 1,233,980 + SMc00563 0.50 +1.9 1,233,980 + SMc00563 0.50 +0.2 1,233,981 - SMc00563 0.50 -0.9 1,233,981 - SMc00563 0.50 -0.1 1,233,981 - SMc00563 0.50 -1.4 1,233,981 - SMc00563 0.50 +0.6 1,234,099 + SMc00563 0.58 +0.4 1,234,100 - SMc00563 0.58 -0.2 1,234,100 - SMc00563 0.58 +0.3 1,234,237 + SMc00563 0.66 +0.3 1,234,238 - SMc00563 0.66 -1.0 1,234,238 - SMc00563 0.66 +0.6 1,234,239 + SMc00563 0.66 +0.5 1,234,239 + SMc00563 0.66 +0.4 1,234,239 + SMc00563 0.66 -0.5 1,234,239 + SMc00563 0.66 -0.3 1,234,240 - SMc00563 0.66 +0.1 1,234,240 - SMc00563 0.66 -1.6 1,234,282 + SMc00563 0.69 -0.6 1,234,282 + SMc00563 0.69 +0.3 1,234,282 + SMc00563 0.69 -1.7 1,234,282 + SMc00563 0.69 +0.3 1,234,282 + SMc00563 0.69 +0.1 1,234,282 + SMc00563 0.69 -0.3 1,234,283 - SMc00563 0.69 -1.7 1,234,283 - SMc00563 0.69 +0.8 1,234,283 - SMc00563 0.69 +0.1 1,234,283 - SMc00563 0.69 +1.3 1,234,283 - SMc00563 0.69 -0.9 1,234,283 - SMc00563 0.69 +0.2 1,234,283 - SMc00563 0.69 -0.5 1,234,283 - SMc00563 0.69 +0.3 1,234,378 + SMc00563 0.75 +1.5 1,234,378 + SMc00563 0.75 -0.3 1,234,378 + SMc00563 0.75 +0.5 1,234,378 + SMc00563 0.75 +2.3 1,234,378 + SMc00563 0.75 -0.6 1,234,378 + SMc00563 0.75 +0.1 1,234,682 + +0.5 1,234,682 + +0.7 1,234,683 - -1.6 1,234,757 + +0.5 1,234,826 + -2.8 1,234,826 + +0.3 1,234,827 - +1.9 1,234,827 - -0.1 1,234,923 + SMc00564 0.14 +0.5 1,234,923 + SMc00564 0.14 -0.4 1,234,996 - SMc00564 0.20 -0.9 1,235,005 + SMc00564 0.21 -0.1 1,235,005 + SMc00564 0.21 -0.6 1,235,005 + SMc00564 0.21 -2.2 1,235,006 - SMc00564 0.21 -1.2 1,235,046 + SMc00564 0.25 -1.3 1,235,493 + SMc00564 0.66 -0.2 1,235,493 + SMc00564 0.66 +0.4 1,235,493 + SMc00564 0.66 -0.3 1,235,494 - SMc00564 0.66 +0.0 1,235,494 - SMc00564 0.66 -1.1 1,235,494 - SMc00564 0.66 +1.1 1,235,494 - SMc00564 0.66 -0.5 1,235,494 - SMc00564 0.66 -0.8 1,235,868 - +0.3 1,236,030 + -0.8 1,236,109 + +1.2 1,236,110 - +1.8 1,236,110 - +0.3 1,236,185 - SMc00565 0.13 -0.1 1,236,823 - SMc00566 0.11 -1.3
Or see this region's nucleotide sequence