Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00265 and SMc00266 are separated by 47 nucleotides SMc00266 and SMc00267 are separated by 289 nucleotides
SMc00265: SMc00265 - periplasmic binding protein, at 1,833,357 to 1,834,367
SMc00265
SMc00266: SMc00266 - transmembrane protein, at 1,834,415 to 1,836,283
SMc00266
SMc00267: SMc00267 - hypothetical protein, at 1,836,573 to 1,837,397
SMc00267
Position (kb)
1834
1835
1836
1837 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1833.597 kb on + strand, within SMc00265 at 1833.597 kb on + strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.659 kb on + strand, within SMc00265 at 1833.659 kb on + strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.694 kb on + strand, within SMc00265 at 1833.694 kb on + strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1834.019 kb on - strand, within SMc00265 at 1834.019 kb on - strand, within SMc00265 at 1834.271 kb on + strand at 1834.272 kb on - strand at 1834.272 kb on - strand at 1834.272 kb on - strand at 1834.273 kb on + strand at 1834.273 kb on + strand at 1834.273 kb on + strand at 1834.273 kb on + strand at 1834.274 kb on - strand at 1834.274 kb on - strand at 1834.352 kb on + strand at 1834.353 kb on - strand at 1834.483 kb on + strand at 1834.484 kb on - strand at 1834.485 kb on + strand at 1834.485 kb on + strand at 1834.485 kb on + strand at 1834.486 kb on - strand at 1834.612 kb on - strand, within SMc00266 at 1834.887 kb on + strand, within SMc00266 at 1834.887 kb on + strand, within SMc00266 at 1834.942 kb on - strand, within SMc00266 at 1835.270 kb on + strand, within SMc00266 at 1835.271 kb on - strand, within SMc00266 at 1835.271 kb on - strand, within SMc00266 at 1835.397 kb on + strand, within SMc00266 at 1835.398 kb on - strand, within SMc00266 at 1835.398 kb on - strand, within SMc00266 at 1835.671 kb on + strand, within SMc00266 at 1835.671 kb on + strand, within SMc00266 at 1835.672 kb on - strand, within SMc00266 at 1835.904 kb on + strand, within SMc00266 at 1835.910 kb on + strand, within SMc00266 at 1835.910 kb on + strand, within SMc00266 at 1835.910 kb on + strand, within SMc00266 at 1835.910 kb on + strand, within SMc00266 at 1835.911 kb on - strand, within SMc00266 at 1835.911 kb on - strand, within SMc00266 at 1836.127 kb on - strand at 1836.186 kb on - strand at 1836.521 kb on + strand at 1836.574 kb on + strand at 1836.581 kb on + strand at 1836.782 kb on + strand, within SMc00267 at 1836.799 kb on + strand, within SMc00267 at 1836.820 kb on + strand, within SMc00267 at 1837.032 kb on + strand, within SMc00267 at 1837.032 kb on + strand, within SMc00267 at 1837.033 kb on - strand, within SMc00267 at 1837.136 kb on + strand, within SMc00267 at 1837.137 kb on - strand, within SMc00267 at 1837.138 kb on + strand, within SMc00267 at 1837.138 kb on + strand, within SMc00267 at 1837.138 kb on + strand, within SMc00267 at 1837.138 kb on + strand, within SMc00267 at 1837.139 kb on - strand, within SMc00267 at 1837.172 kb on + strand, within SMc00267 at 1837.172 kb on + strand, within SMc00267 at 1837.190 kb on + strand, within SMc00267 at 1837.195 kb on + strand, within SMc00267 at 1837.196 kb on - strand, within SMc00267 at 1837.267 kb on + strand, within SMc00267 at 1837.268 kb on - strand, within SMc00267
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,833,597 + SMc00265 0.24 +0.8 1,833,597 + SMc00265 0.24 +0.2 1,833,598 - SMc00265 0.24 +0.0 1,833,598 - SMc00265 0.24 -0.2 1,833,598 - SMc00265 0.24 +0.6 1,833,598 - SMc00265 0.24 +1.4 1,833,598 - SMc00265 0.24 -0.0 1,833,659 + SMc00265 0.30 -1.2 1,833,659 + SMc00265 0.30 +0.8 1,833,660 - SMc00265 0.30 +1.9 1,833,660 - SMc00265 0.30 -0.2 1,833,660 - SMc00265 0.30 -0.5 1,833,660 - SMc00265 0.30 -0.2 1,833,660 - SMc00265 0.30 -0.4 1,833,694 + SMc00265 0.33 -0.8 1,833,694 + SMc00265 0.33 +0.7 1,833,695 - SMc00265 0.33 -0.0 1,833,695 - SMc00265 0.33 -0.9 1,833,695 - SMc00265 0.33 +0.8 1,833,695 - SMc00265 0.33 -0.8 1,833,695 - SMc00265 0.33 +0.8 1,834,019 - SMc00265 0.65 -1.4 1,834,019 - SMc00265 0.65 -1.4 1,834,271 + -0.1 1,834,272 - +0.7 1,834,272 - -0.7 1,834,272 - +1.1 1,834,273 + +0.6 1,834,273 + -0.1 1,834,273 + +0.1 1,834,273 + -0.1 1,834,274 - -1.2 1,834,274 - -0.3 1,834,352 + -0.1 1,834,353 - +0.4 1,834,483 + +1.9 1,834,484 - +1.6 1,834,485 + -0.5 1,834,485 + -1.7 1,834,485 + -1.6 1,834,486 - -1.8 1,834,612 - SMc00266 0.11 -0.5 1,834,887 + SMc00266 0.25 -1.1 1,834,887 + SMc00266 0.25 +0.1 1,834,942 - SMc00266 0.28 -0.4 1,835,270 + SMc00266 0.46 +0.2 1,835,271 - SMc00266 0.46 -0.2 1,835,271 - SMc00266 0.46 +1.3 1,835,397 + SMc00266 0.53 -0.2 1,835,398 - SMc00266 0.53 -1.7 1,835,398 - SMc00266 0.53 +0.3 1,835,671 + SMc00266 0.67 -2.1 1,835,671 + SMc00266 0.67 +0.3 1,835,672 - SMc00266 0.67 -0.6 1,835,904 + SMc00266 0.80 +0.2 1,835,910 + SMc00266 0.80 +1.7 1,835,910 + SMc00266 0.80 +2.1 1,835,910 + SMc00266 0.80 +0.5 1,835,910 + SMc00266 0.80 -0.1 1,835,911 - SMc00266 0.80 +3.5 1,835,911 - SMc00266 0.80 +0.4 1,836,127 - +0.2 1,836,186 - +0.2 1,836,521 + +1.7 1,836,574 + +0.9 1,836,581 + -0.2 1,836,782 + SMc00267 0.25 +2.1 1,836,799 + SMc00267 0.27 -0.6 1,836,820 + SMc00267 0.30 -1.5 1,837,032 + SMc00267 0.56 -1.3 1,837,032 + SMc00267 0.56 -0.4 1,837,033 - SMc00267 0.56 +0.1 1,837,136 + SMc00267 0.68 -0.8 1,837,137 - SMc00267 0.68 -3.2 1,837,138 + SMc00267 0.68 -0.9 1,837,138 + SMc00267 0.68 +1.7 1,837,138 + SMc00267 0.68 +0.6 1,837,138 + SMc00267 0.68 -0.0 1,837,139 - SMc00267 0.69 -0.4 1,837,172 + SMc00267 0.73 +3.9 1,837,172 + SMc00267 0.73 +0.9 1,837,190 + SMc00267 0.75 +0.3 1,837,195 + SMc00267 0.75 +0.0 1,837,196 - SMc00267 0.76 +2.3 1,837,267 + SMc00267 0.84 +0.2 1,837,268 - SMc00267 0.84 +1.0
Or see this region's nucleotide sequence