Strain Fitness in Sinorhizobium meliloti 1021 around SMc00264

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00262 and SMc00263 overlap by 4 nucleotidesSMc00263 and SMc00264 are separated by 3 nucleotidesSMc00264 and SMc00265 are separated by 102 nucleotides SMc00262: SMc00262 - acetyl-CoA acetyltransferase, at 1,830,433 to 1,831,602 SMc00262 SMc00263: SMc00263 - transcriptional regulator, at 1,831,599 to 1,832,447 SMc00263 SMc00264: SMc00264 - oxidoreductase, at 1,832,451 to 1,833,254 SMc00264 SMc00265: SMc00265 - periplasmic binding protein, at 1,833,357 to 1,834,367 SMc00265 Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -1 0 1 2 3at 1831.582 kb on + strandat 1831.583 kb on - strandat 1831.583 kb on - strandat 1831.641 kb on + strandat 1831.641 kb on + strandat 1831.641 kb on + strandat 1831.641 kb on + strandat 1831.642 kb on - strandat 1831.642 kb on - strandat 1831.642 kb on - strandat 1831.642 kb on - strandat 1831.642 kb on - strandat 1831.842 kb on - strand, within SMc00263at 1832.218 kb on + strand, within SMc00263at 1832.218 kb on + strand, within SMc00263at 1832.219 kb on - strand, within SMc00263at 1832.235 kb on - strand, within SMc00263at 1832.236 kb on + strand, within SMc00263at 1832.236 kb on + strand, within SMc00263at 1832.237 kb on - strand, within SMc00263at 1832.237 kb on - strand, within SMc00263at 1832.237 kb on - strand, within SMc00263at 1832.237 kb on - strand, within SMc00263at 1832.240 kb on - strand, within SMc00263at 1832.309 kb on + strand, within SMc00263at 1832.457 kb on + strandat 1832.457 kb on + strandat 1832.458 kb on - strandat 1832.633 kb on - strand, within SMc00264at 1832.653 kb on + strand, within SMc00264at 1832.653 kb on + strand, within SMc00264at 1832.716 kb on + strand, within SMc00264at 1832.717 kb on - strand, within SMc00264at 1832.768 kb on - strand, within SMc00264at 1832.768 kb on - strand, within SMc00264at 1832.780 kb on - strand, within SMc00264at 1833.160 kb on + strand, within SMc00264at 1833.161 kb on - strand, within SMc00264at 1833.161 kb on - strand, within SMc00264at 1833.597 kb on + strand, within SMc00265at 1833.597 kb on + strand, within SMc00265at 1833.598 kb on - strand, within SMc00265at 1833.598 kb on - strand, within SMc00265at 1833.598 kb on - strand, within SMc00265at 1833.598 kb on - strand, within SMc00265at 1833.598 kb on - strand, within SMc00265at 1833.659 kb on + strand, within SMc00265at 1833.659 kb on + strand, within SMc00265at 1833.660 kb on - strand, within SMc00265at 1833.660 kb on - strand, within SMc00265at 1833.660 kb on - strand, within SMc00265at 1833.660 kb on - strand, within SMc00265at 1833.660 kb on - strand, within SMc00265at 1833.694 kb on + strand, within SMc00265at 1833.694 kb on + strand, within SMc00265at 1833.695 kb on - strand, within SMc00265at 1833.695 kb on - strand, within SMc00265at 1833.695 kb on - strand, within SMc00265at 1833.695 kb on - strand, within SMc00265at 1833.695 kb on - strand, within SMc00265at 1834.019 kb on - strand, within SMc00265at 1834.019 kb on - strand, within SMc00265

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,831,582 + -1.2
1,831,583 - -1.6
1,831,583 - +0.6
1,831,641 + -0.4
1,831,641 + -0.1
1,831,641 + +0.7
1,831,641 + -0.7
1,831,642 - -1.1
1,831,642 - -0.1
1,831,642 - -0.9
1,831,642 - +1.9
1,831,642 - -0.3
1,831,842 - SMc00263 0.29 -0.7
1,832,218 + SMc00263 0.73 +1.0
1,832,218 + SMc00263 0.73 -0.4
1,832,219 - SMc00263 0.73 +1.4
1,832,235 - SMc00263 0.75 +0.2
1,832,236 + SMc00263 0.75 +0.6
1,832,236 + SMc00263 0.75 +0.2
1,832,237 - SMc00263 0.75 -0.6
1,832,237 - SMc00263 0.75 +0.2
1,832,237 - SMc00263 0.75 +0.2
1,832,237 - SMc00263 0.75 +1.2
1,832,240 - SMc00263 0.76 -0.8
1,832,309 + SMc00263 0.84 -0.1
1,832,457 + +1.5
1,832,457 + -0.3
1,832,458 - -0.1
1,832,633 - SMc00264 0.23 -1.1
1,832,653 + SMc00264 0.25 +2.9
1,832,653 + SMc00264 0.25 -0.4
1,832,716 + SMc00264 0.33 -0.4
1,832,717 - SMc00264 0.33 -0.3
1,832,768 - SMc00264 0.39 +0.1
1,832,768 - SMc00264 0.39 -0.1
1,832,780 - SMc00264 0.41 +1.9
1,833,160 + SMc00264 0.88 -1.3
1,833,161 - SMc00264 0.88 -0.9
1,833,161 - SMc00264 0.88 -0.5
1,833,597 + SMc00265 0.24 +0.8
1,833,597 + SMc00265 0.24 +0.2
1,833,598 - SMc00265 0.24 +0.0
1,833,598 - SMc00265 0.24 -0.2
1,833,598 - SMc00265 0.24 +0.6
1,833,598 - SMc00265 0.24 +1.4
1,833,598 - SMc00265 0.24 -0.0
1,833,659 + SMc00265 0.30 -1.2
1,833,659 + SMc00265 0.30 +0.8
1,833,660 - SMc00265 0.30 +1.9
1,833,660 - SMc00265 0.30 -0.2
1,833,660 - SMc00265 0.30 -0.5
1,833,660 - SMc00265 0.30 -0.2
1,833,660 - SMc00265 0.30 -0.4
1,833,694 + SMc00265 0.33 -0.8
1,833,694 + SMc00265 0.33 +0.7
1,833,695 - SMc00265 0.33 -0.0
1,833,695 - SMc00265 0.33 -0.9
1,833,695 - SMc00265 0.33 +0.8
1,833,695 - SMc00265 0.33 -0.8
1,833,695 - SMc00265 0.33 +0.8
1,834,019 - SMc00265 0.65 -1.4
1,834,019 - SMc00265 0.65 -1.4

Or see this region's nucleotide sequence