Strain Fitness in Sinorhizobium meliloti 1021 around SMa1913

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1910 and SMa1913 are separated by 342 nucleotidesSMa1913 and SMa1916 are separated by 159 nucleotides SMa1910: SMa1910 - hypothetical protein, at 1,087,264 to 1,087,539 SMa1910 SMa1913: SMa1913 - Na+/H+ antiporter, at 1,087,882 to 1,089,270 SMa1913 SMa1916: SMa1916 - Permease, at 1,089,430 to 1,091,208 SMa1916 Position (kb) 1087 1088 1089 1090Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1086.989 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.010 kb on - strandat 1087.010 kb on - strandat 1087.010 kb on - strandat 1087.010 kb on - strandat 1087.011 kb on + strandat 1087.011 kb on + strandat 1087.012 kb on - strandat 1087.012 kb on - strandat 1087.013 kb on + strandat 1087.013 kb on + strandat 1087.014 kb on - strandat 1087.014 kb on - strandat 1087.014 kb on - strandat 1087.014 kb on - strandat 1087.064 kb on + strandat 1087.065 kb on - strandat 1087.065 kb on - strandat 1087.078 kb on - strandat 1087.136 kb on - strandat 1087.136 kb on - strandat 1087.139 kb on + strandat 1087.175 kb on - strandat 1087.185 kb on + strandat 1087.214 kb on + strandat 1087.275 kb on - strandat 1087.341 kb on + strand, within SMa1910at 1087.465 kb on + strand, within SMa1910at 1087.466 kb on - strand, within SMa1910at 1087.487 kb on - strand, within SMa1910at 1087.511 kb on - strand, within SMa1910at 1087.511 kb on - strand, within SMa1910at 1087.568 kb on + strandat 1087.651 kb on + strandat 1087.651 kb on + strandat 1087.654 kb on + strandat 1087.689 kb on + strandat 1087.689 kb on + strandat 1087.712 kb on + strandat 1087.713 kb on - strandat 1087.880 kb on + strandat 1087.881 kb on - strandat 1087.881 kb on - strandat 1087.903 kb on - strandat 1088.053 kb on - strand, within SMa1913at 1088.168 kb on - strand, within SMa1913at 1088.168 kb on - strand, within SMa1913at 1088.385 kb on + strand, within SMa1913at 1088.386 kb on - strand, within SMa1913at 1088.502 kb on - strand, within SMa1913at 1088.621 kb on - strand, within SMa1913at 1088.694 kb on - strand, within SMa1913at 1088.726 kb on + strand, within SMa1913at 1089.077 kb on + strand, within SMa1913at 1089.078 kb on - strand, within SMa1913at 1089.078 kb on - strand, within SMa1913at 1089.335 kb on - strandat 1089.388 kb on + strandat 1089.431 kb on + strandat 1089.484 kb on - strandat 1089.552 kb on + strandat 1089.552 kb on + strandat 1089.632 kb on + strand, within SMa1916at 1089.632 kb on + strand, within SMa1916at 1089.633 kb on - strand, within SMa1916at 1089.633 kb on - strand, within SMa1916at 1089.792 kb on + strand, within SMa1916at 1089.792 kb on + strand, within SMa1916at 1089.793 kb on - strand, within SMa1916at 1089.853 kb on + strand, within SMa1916at 1089.861 kb on + strand, within SMa1916at 1089.862 kb on - strand, within SMa1916at 1089.881 kb on + strand, within SMa1916at 1089.882 kb on - strand, within SMa1916at 1089.958 kb on + strand, within SMa1916at 1089.959 kb on - strand, within SMa1916at 1089.959 kb on - strand, within SMa1916at 1090.109 kb on - strand, within SMa1916at 1090.264 kb on + strand, within SMa1916at 1090.265 kb on - strand, within SMa1916at 1090.265 kb on - strand, within SMa1916

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,086,989 + +1.4
1,087,009 + +2.1
1,087,009 + +0.1
1,087,009 + -0.9
1,087,009 + -3.6
1,087,009 + -0.9
1,087,009 + -0.6
1,087,009 + -0.5
1,087,010 - +0.4
1,087,010 - -1.8
1,087,010 - +0.2
1,087,010 - -0.7
1,087,011 + -0.0
1,087,011 + +0.3
1,087,012 - -0.0
1,087,012 - +0.6
1,087,013 + +0.2
1,087,013 + -0.8
1,087,014 - +0.2
1,087,014 - +0.8
1,087,014 - -0.5
1,087,014 - +0.5
1,087,064 + -0.0
1,087,065 - -0.1
1,087,065 - -0.0
1,087,078 - -0.3
1,087,136 - -0.0
1,087,136 - +1.1
1,087,139 + -0.3
1,087,175 - -0.3
1,087,185 + -0.4
1,087,214 + +0.9
1,087,275 - +0.2
1,087,341 + SMa1910 0.28 +0.2
1,087,465 + SMa1910 0.73 +0.1
1,087,466 - SMa1910 0.73 -1.5
1,087,487 - SMa1910 0.81 +0.0
1,087,511 - SMa1910 0.89 +0.6
1,087,511 - SMa1910 0.89 -1.0
1,087,568 + -1.1
1,087,651 + +1.1
1,087,651 + +1.5
1,087,654 + -0.1
1,087,689 + -0.2
1,087,689 + -0.2
1,087,712 + -0.5
1,087,713 - +0.3
1,087,880 + -0.3
1,087,881 - +0.0
1,087,881 - -1.3
1,087,903 - -0.6
1,088,053 - SMa1913 0.12 -0.4
1,088,168 - SMa1913 0.21 -0.6
1,088,168 - SMa1913 0.21 +1.0
1,088,385 + SMa1913 0.36 +2.8
1,088,386 - SMa1913 0.36 +0.2
1,088,502 - SMa1913 0.45 +0.5
1,088,621 - SMa1913 0.53 -0.7
1,088,694 - SMa1913 0.58 -0.5
1,088,726 + SMa1913 0.61 -2.2
1,089,077 + SMa1913 0.86 -0.8
1,089,078 - SMa1913 0.86 +0.3
1,089,078 - SMa1913 0.86 +0.8
1,089,335 - +0.3
1,089,388 + +2.2
1,089,431 + -0.7
1,089,484 - +0.1
1,089,552 + +0.5
1,089,552 + +0.6
1,089,632 + SMa1916 0.11 -0.9
1,089,632 + SMa1916 0.11 -1.9
1,089,633 - SMa1916 0.11 -0.0
1,089,633 - SMa1916 0.11 +0.3
1,089,792 + SMa1916 0.20 -0.5
1,089,792 + SMa1916 0.20 -0.3
1,089,793 - SMa1916 0.20 +0.7
1,089,853 + SMa1916 0.24 -0.2
1,089,861 + SMa1916 0.24 -1.5
1,089,862 - SMa1916 0.24 +0.4
1,089,881 + SMa1916 0.25 -0.5
1,089,882 - SMa1916 0.25 -0.6
1,089,958 + SMa1916 0.30 +0.7
1,089,959 - SMa1916 0.30 +1.6
1,089,959 - SMa1916 0.30 -0.2
1,090,109 - SMa1916 0.38 +0.0
1,090,264 + SMa1916 0.47 +0.1
1,090,265 - SMa1916 0.47 -0.3
1,090,265 - SMa1916 0.47 +0.4

Or see this region's nucleotide sequence