Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1905 and SMa1907 are separated by 658 nucleotides
SMa1905: SMa1905 - MrcB penicillin binding protein B, at 1,082,806 to 1,085,151
SMa1905
SMa1907: SMa1907 - hypothetical protein, at 1,085,810 to 1,086,190
SMa1907
Position (kb)
1082
1083
1084
1085
1086 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1081.858 kb on + strand at 1081.913 kb on - strand at 1081.921 kb on + strand at 1082.055 kb on - strand at 1082.077 kb on - strand at 1082.077 kb on - strand at 1082.077 kb on - strand at 1082.157 kb on + strand at 1082.158 kb on - strand at 1082.158 kb on - strand at 1082.158 kb on - strand at 1082.189 kb on + strand at 1082.226 kb on + strand at 1082.226 kb on + strand at 1082.227 kb on - strand at 1082.227 kb on - strand at 1082.227 kb on - strand at 1082.262 kb on + strand at 1082.263 kb on - strand at 1082.278 kb on + strand at 1082.308 kb on - strand at 1082.315 kb on + strand at 1082.316 kb on - strand at 1082.323 kb on + strand at 1082.427 kb on + strand at 1082.428 kb on - strand at 1082.646 kb on - strand at 1082.646 kb on - strand at 1082.646 kb on - strand at 1082.796 kb on - strand at 1082.797 kb on - strand at 1083.069 kb on + strand, within SMa1905 at 1083.070 kb on - strand, within SMa1905 at 1083.096 kb on - strand, within SMa1905 at 1083.150 kb on + strand, within SMa1905 at 1083.203 kb on - strand, within SMa1905 at 1083.300 kb on + strand, within SMa1905 at 1083.301 kb on - strand, within SMa1905 at 1083.311 kb on + strand, within SMa1905 at 1083.311 kb on + strand, within SMa1905 at 1083.311 kb on + strand, within SMa1905 at 1083.317 kb on + strand, within SMa1905 at 1083.424 kb on + strand, within SMa1905 at 1083.445 kb on + strand, within SMa1905 at 1083.445 kb on + strand, within SMa1905 at 1083.445 kb on + strand, within SMa1905 at 1083.445 kb on + strand, within SMa1905 at 1083.446 kb on - strand, within SMa1905 at 1083.448 kb on - strand, within SMa1905 at 1083.448 kb on - strand, within SMa1905 at 1083.578 kb on + strand, within SMa1905 at 1083.578 kb on + strand at 1083.578 kb on + strand, within SMa1905 at 1083.578 kb on + strand, within SMa1905 at 1083.645 kb on - strand, within SMa1905 at 1083.657 kb on - strand, within SMa1905 at 1083.722 kb on - strand, within SMa1905 at 1084.134 kb on - strand, within SMa1905 at 1084.134 kb on - strand, within SMa1905 at 1084.214 kb on + strand, within SMa1905 at 1084.257 kb on + strand, within SMa1905 at 1084.313 kb on - strand, within SMa1905 at 1084.315 kb on + strand, within SMa1905 at 1084.315 kb on + strand, within SMa1905 at 1084.316 kb on - strand, within SMa1905 at 1084.316 kb on - strand, within SMa1905 at 1084.401 kb on + strand, within SMa1905 at 1084.546 kb on - strand, within SMa1905 at 1084.546 kb on - strand, within SMa1905 at 1084.546 kb on - strand, within SMa1905 at 1084.549 kb on - strand, within SMa1905 at 1084.586 kb on + strand, within SMa1905 at 1084.587 kb on - strand, within SMa1905 at 1084.597 kb on - strand, within SMa1905 at 1084.638 kb on - strand, within SMa1905 at 1084.704 kb on + strand, within SMa1905 at 1084.704 kb on + strand, within SMa1905 at 1084.725 kb on - strand, within SMa1905 at 1084.733 kb on - strand, within SMa1905 at 1084.763 kb on + strand, within SMa1905 at 1084.954 kb on - strand at 1085.062 kb on - strand at 1085.062 kb on - strand at 1085.080 kb on + strand at 1085.080 kb on + strand at 1085.080 kb on + strand at 1085.081 kb on - strand at 1085.110 kb on + strand at 1085.111 kb on - strand at 1085.149 kb on + strand at 1085.247 kb on - strand at 1085.377 kb on - strand at 1085.377 kb on - strand at 1085.378 kb on + strand at 1085.379 kb on - strand at 1085.431 kb on - strand at 1085.431 kb on - strand at 1085.431 kb on - strand at 1085.503 kb on + strand at 1085.503 kb on + strand at 1085.812 kb on - strand at 1085.994 kb on + strand, within SMa1907 at 1085.995 kb on - strand, within SMa1907 at 1086.046 kb on + strand, within SMa1907 at 1086.126 kb on + strand, within SMa1907 at 1086.134 kb on - strand, within SMa1907
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,081,858 + +0.9 1,081,913 - +0.1 1,081,921 + -0.8 1,082,055 - -0.9 1,082,077 - -0.7 1,082,077 - -0.5 1,082,077 - +0.5 1,082,157 + -0.3 1,082,158 - -0.1 1,082,158 - +0.4 1,082,158 - +1.6 1,082,189 + +0.5 1,082,226 + +0.3 1,082,226 + -1.4 1,082,227 - -0.1 1,082,227 - -1.0 1,082,227 - +1.2 1,082,262 + -0.1 1,082,263 - +0.1 1,082,278 + +0.6 1,082,308 - -0.5 1,082,315 + -0.4 1,082,316 - +0.2 1,082,323 + -0.3 1,082,427 + -1.0 1,082,428 - -0.5 1,082,646 - +0.5 1,082,646 - -0.3 1,082,646 - +0.5 1,082,796 - +1.1 1,082,797 - -0.6 1,083,069 + SMa1905 0.11 -0.3 1,083,070 - SMa1905 0.11 -3.1 1,083,096 - SMa1905 0.12 -0.2 1,083,150 + SMa1905 0.15 -0.8 1,083,203 - SMa1905 0.17 -0.1 1,083,300 + SMa1905 0.21 +0.9 1,083,301 - SMa1905 0.21 +0.8 1,083,311 + SMa1905 0.22 -0.7 1,083,311 + SMa1905 0.22 +2.5 1,083,311 + SMa1905 0.22 -2.0 1,083,317 + SMa1905 0.22 +0.5 1,083,424 + SMa1905 0.26 -0.2 1,083,445 + SMa1905 0.27 +0.1 1,083,445 + SMa1905 0.27 +0.9 1,083,445 + SMa1905 0.27 +0.1 1,083,445 + SMa1905 0.27 -0.0 1,083,446 - SMa1905 0.27 +0.4 1,083,448 - SMa1905 0.27 -0.1 1,083,448 - SMa1905 0.27 +1.9 1,083,578 + SMa1905 0.33 +0.4 1,083,578 + +0.9 1,083,578 + SMa1905 0.33 -1.1 1,083,578 + SMa1905 0.33 -0.2 1,083,645 - SMa1905 0.36 -0.5 1,083,657 - SMa1905 0.36 +0.6 1,083,722 - SMa1905 0.39 +0.5 1,084,134 - SMa1905 0.57 +0.2 1,084,134 - SMa1905 0.57 -0.3 1,084,214 + SMa1905 0.60 -2.2 1,084,257 + SMa1905 0.62 -1.2 1,084,313 - SMa1905 0.64 -0.9 1,084,315 + SMa1905 0.64 +0.5 1,084,315 + SMa1905 0.64 +0.3 1,084,316 - SMa1905 0.64 +0.5 1,084,316 - SMa1905 0.64 +0.5 1,084,401 + SMa1905 0.68 -0.1 1,084,546 - SMa1905 0.74 +0.3 1,084,546 - SMa1905 0.74 +0.5 1,084,546 - SMa1905 0.74 +0.2 1,084,549 - SMa1905 0.74 -0.4 1,084,586 + SMa1905 0.76 -0.6 1,084,587 - SMa1905 0.76 +4.1 1,084,597 - SMa1905 0.76 +0.2 1,084,638 - SMa1905 0.78 +0.9 1,084,704 + SMa1905 0.81 -0.2 1,084,704 + SMa1905 0.81 +0.5 1,084,725 - SMa1905 0.82 +0.4 1,084,733 - SMa1905 0.82 -0.8 1,084,763 + SMa1905 0.83 -0.7 1,084,954 - -0.5 1,085,062 - -0.2 1,085,062 - +0.2 1,085,080 + +0.3 1,085,080 + -1.9 1,085,080 + -2.4 1,085,081 - -1.0 1,085,110 + -0.3 1,085,111 - -0.4 1,085,149 + +2.9 1,085,247 - -1.7 1,085,377 - -1.5 1,085,377 - -0.3 1,085,378 + -0.5 1,085,379 - +1.4 1,085,431 - -1.4 1,085,431 - +0.3 1,085,431 - +0.1 1,085,503 + +0.6 1,085,503 + +0.1 1,085,812 - +0.5 1,085,994 + SMa1907 0.48 +0.3 1,085,995 - SMa1907 0.49 +1.3 1,086,046 + SMa1907 0.62 -0.2 1,086,126 + SMa1907 0.83 +0.7 1,086,134 - SMa1907 0.85 +3.4
Or see this region's nucleotide sequence