Strain Fitness in Sinorhizobium meliloti 1021 around SMa0570

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa5026 and SMa0567 are separated by 153 nucleotidesSMa0567 and SMa0570 are separated by 115 nucleotidesSMa0570 and SMa0572 are separated by 790 nucleotides SMa5026: SMa5026 - hypothetical protein, at 300,571 to 301,050 SMa5026 SMa0567: SMa0567 - hypothetical protein, at 301,204 to 301,761 SMa0567 SMa0570: SMa0570 - CyaF4 adenylate cyclase, at 301,877 to 303,766 SMa0570 SMa0572: SMa0572 - hypothetical protein, at 304,557 to 304,880 SMa0572 Position (kb) 301 302 303 304Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 300.906 kb on - strand, within SMa5026at 300.968 kb on - strand, within SMa5026at 301.084 kb on - strandat 301.154 kb on + strandat 301.155 kb on - strandat 301.230 kb on + strandat 301.258 kb on + strandat 301.259 kb on - strandat 301.263 kb on - strand, within SMa0567at 301.280 kb on - strand, within SMa0567at 301.487 kb on + strand, within SMa0567at 301.488 kb on - strand, within SMa0567at 301.496 kb on + strand, within SMa0567at 301.496 kb on + strand, within SMa0567at 301.497 kb on - strand, within SMa0567at 301.497 kb on - strand, within SMa0567at 301.497 kb on - strand, within SMa0567at 301.567 kb on - strand, within SMa0567at 301.840 kb on - strandat 301.843 kb on + strandat 301.844 kb on - strandat 301.859 kb on + strandat 301.862 kb on + strandat 301.862 kb on + strandat 301.863 kb on - strandat 301.972 kb on + strandat 302.205 kb on + strand, within SMa0570at 302.206 kb on - strand, within SMa0570at 302.305 kb on + strand, within SMa0570at 302.320 kb on + strand, within SMa0570at 302.322 kb on + strand, within SMa0570at 302.323 kb on - strand, within SMa0570at 302.323 kb on - strand, within SMa0570at 302.461 kb on + strand, within SMa0570at 302.667 kb on + strand, within SMa0570at 302.667 kb on + strand, within SMa0570at 302.667 kb on + strand, within SMa0570at 302.676 kb on + strand, within SMa0570at 302.676 kb on + strand, within SMa0570at 302.798 kb on + strand, within SMa0570at 302.798 kb on + strand, within SMa0570at 302.798 kb on + strand, within SMa0570at 302.880 kb on - strand, within SMa0570at 302.957 kb on + strand, within SMa0570at 302.958 kb on - strand, within SMa0570at 302.958 kb on - strand, within SMa0570at 302.958 kb on - strand, within SMa0570at 302.973 kb on + strand, within SMa0570at 303.088 kb on - strand, within SMa0570at 303.121 kb on + strand, within SMa0570at 303.186 kb on - strand, within SMa0570at 303.360 kb on - strand, within SMa0570at 303.360 kb on - strand, within SMa0570at 303.436 kb on - strand, within SMa0570at 303.542 kb on + strand, within SMa0570at 303.745 kb on + strandat 303.792 kb on + strandat 303.793 kb on - strandat 303.793 kb on - strandat 303.794 kb on + strandat 303.795 kb on - strandat 303.795 kb on - strandat 303.841 kb on + strandat 303.915 kb on + strandat 303.916 kb on - strandat 304.173 kb on - strandat 304.173 kb on - strandat 304.202 kb on + strandat 304.203 kb on - strandat 304.356 kb on + strandat 304.394 kb on - strandat 304.404 kb on + strandat 304.405 kb on - strandat 304.405 kb on - strandat 304.411 kb on + strandat 304.412 kb on - strandat 304.412 kb on - strandat 304.412 kb on - strandat 304.455 kb on - strandat 304.566 kb on - strandat 304.566 kb on - strandat 304.569 kb on - strandat 304.614 kb on + strand, within SMa0572at 304.617 kb on + strand, within SMa0572at 304.618 kb on - strand, within SMa0572at 304.725 kb on + strand, within SMa0572at 304.725 kb on + strand, within SMa0572at 304.726 kb on - strand, within SMa0572at 304.726 kb on - strand, within SMa0572at 304.747 kb on + strand, within SMa0572at 304.748 kb on - strand, within SMa0572at 304.748 kb on - strand, within SMa0572

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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300,906 - SMa5026 0.70 -0.7
300,968 - SMa5026 0.83 +0.3
301,084 - +0.2
301,154 + -0.4
301,155 - +1.3
301,230 + -0.6
301,258 + -0.5
301,259 - -0.1
301,263 - SMa0567 0.11 +0.9
301,280 - SMa0567 0.14 +1.2
301,487 + SMa0567 0.51 +0.2
301,488 - SMa0567 0.51 +1.1
301,496 + SMa0567 0.52 +0.4
301,496 + SMa0567 0.52 -1.2
301,497 - SMa0567 0.53 +0.5
301,497 - SMa0567 0.53 -1.6
301,497 - SMa0567 0.53 -0.1
301,567 - SMa0567 0.65 +0.9
301,840 - -0.0
301,843 + -1.5
301,844 - +0.4
301,859 + -1.2
301,862 + -1.2
301,862 + -0.2
301,863 - +0.5
301,972 + +0.5
302,205 + SMa0570 0.17 +0.1
302,206 - SMa0570 0.17 +0.2
302,305 + SMa0570 0.23 -3.3
302,320 + SMa0570 0.23 -0.1
302,322 + SMa0570 0.24 +0.2
302,323 - SMa0570 0.24 -3.5
302,323 - SMa0570 0.24 +0.7
302,461 + SMa0570 0.31 +1.8
302,667 + SMa0570 0.42 +0.8
302,667 + SMa0570 0.42 +1.5
302,667 + SMa0570 0.42 +1.4
302,676 + SMa0570 0.42 +0.9
302,676 + SMa0570 0.42 -0.5
302,798 + SMa0570 0.49 +1.4
302,798 + SMa0570 0.49 +1.1
302,798 + SMa0570 0.49 -0.0
302,880 - SMa0570 0.53 +0.4
302,957 + SMa0570 0.57 +0.5
302,958 - SMa0570 0.57 +0.2
302,958 - SMa0570 0.57 +0.5
302,958 - SMa0570 0.57 +0.0
302,973 + SMa0570 0.58 -3.9
303,088 - SMa0570 0.64 -0.4
303,121 + SMa0570 0.66 +0.3
303,186 - SMa0570 0.69 +0.7
303,360 - SMa0570 0.78 -0.3
303,360 - SMa0570 0.78 -0.3
303,436 - SMa0570 0.82 +0.1
303,542 + SMa0570 0.88 +0.7
303,745 + -0.5
303,792 + +1.1
303,793 - +2.8
303,793 - +2.2
303,794 + +0.7
303,795 - -2.6
303,795 - -1.9
303,841 + -0.8
303,915 + -1.0
303,916 - -0.2
304,173 - -0.1
304,173 - +2.9
304,202 + -0.5
304,203 - -0.4
304,356 + +1.2
304,394 - +0.4
304,404 + -0.4
304,405 - -1.3
304,405 - -0.2
304,411 + -0.9
304,412 - -2.0
304,412 - +0.5
304,412 - -0.0
304,455 - +0.2
304,566 - +0.3
304,566 - -0.1
304,569 - +0.4
304,614 + SMa0572 0.18 +0.0
304,617 + SMa0572 0.19 +2.2
304,618 - SMa0572 0.19 -1.2
304,725 + SMa0572 0.52 +0.8
304,725 + SMa0572 0.52 +0.6
304,726 - SMa0572 0.52 -1.1
304,726 - SMa0572 0.52 +0.1
304,747 + SMa0572 0.59 -0.6
304,748 - SMa0572 0.59 +0.3
304,748 - SMa0572 0.59 +0.1

Or see this region's nucleotide sequence