Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0134 and SMa5002 are separated by 40 nucleotides SMa5002 and SMa0136 are separated by 247 nucleotides SMa0136 and SMa0137 are separated by 91 nucleotides
SMa0134: SMa0134 - hypothetical protein, at 71,066 to 71,671
SMa0134
SMa5002: SMa5002 - hypothetical protein, at 71,712 to 72,026
SMa5002
SMa0136: SMa0136 - hypothetical protein, at 72,274 to 74,286
SMa0136
SMa0137: SMa0137 - Diguanylate cyclase/phosphodiesterase, at 74,378 to 76,579
SMa0137
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.292 kb on + strand, within SMa0134 at 71.293 kb on - strand, within SMa0134 at 71.420 kb on + strand, within SMa0134 at 71.420 kb on + strand, within SMa0134 at 71.496 kb on - strand, within SMa0134 at 71.496 kb on - strand, within SMa0134 at 71.640 kb on + strand at 71.660 kb on + strand at 71.660 kb on + strand at 71.672 kb on - strand at 71.714 kb on - strand at 71.714 kb on - strand at 71.725 kb on - strand at 71.828 kb on + strand, within SMa5002 at 71.828 kb on + strand, within SMa5002 at 71.828 kb on + strand, within SMa5002 at 71.828 kb on + strand, within SMa5002 at 71.829 kb on - strand, within SMa5002 at 71.926 kb on - strand, within SMa5002 at 72.015 kb on + strand at 72.032 kb on + strand at 72.106 kb on + strand at 72.107 kb on - strand at 72.107 kb on - strand at 72.112 kb on + strand at 72.200 kb on - strand at 72.203 kb on + strand at 72.204 kb on - strand at 72.204 kb on - strand at 72.204 kb on - strand at 72.424 kb on + strand at 72.424 kb on + strand at 72.425 kb on - strand at 72.590 kb on + strand, within SMa0136 at 72.590 kb on + strand, within SMa0136 at 72.591 kb on - strand, within SMa0136 at 72.631 kb on + strand, within SMa0136 at 72.632 kb on - strand, within SMa0136 at 72.632 kb on - strand, within SMa0136 at 72.632 kb on - strand, within SMa0136 at 72.638 kb on - strand, within SMa0136 at 72.638 kb on - strand, within SMa0136 at 72.638 kb on - strand, within SMa0136 at 73.094 kb on + strand, within SMa0136 at 73.094 kb on + strand, within SMa0136 at 73.130 kb on + strand, within SMa0136 at 73.130 kb on + strand, within SMa0136 at 73.147 kb on + strand, within SMa0136 at 73.148 kb on - strand, within SMa0136 at 73.150 kb on - strand, within SMa0136 at 73.489 kb on + strand, within SMa0136 at 73.489 kb on + strand, within SMa0136 at 73.489 kb on + strand, within SMa0136 at 73.489 kb on + strand, within SMa0136 at 73.558 kb on + strand, within SMa0136 at 73.559 kb on - strand, within SMa0136 at 73.559 kb on - strand, within SMa0136 at 73.559 kb on - strand, within SMa0136 at 73.559 kb on - strand, within SMa0136 at 73.574 kb on - strand, within SMa0136 at 73.761 kb on + strand, within SMa0136 at 73.780 kb on + strand, within SMa0136 at 73.934 kb on + strand, within SMa0136 at 73.935 kb on - strand, within SMa0136 at 73.935 kb on - strand, within SMa0136 at 74.013 kb on + strand, within SMa0136 at 74.019 kb on - strand, within SMa0136 at 74.035 kb on - strand, within SMa0136 at 74.035 kb on - strand, within SMa0136 at 74.141 kb on + strand at 74.285 kb on - strand at 74.285 kb on - strand at 74.291 kb on + strand at 74.291 kb on + strand at 74.291 kb on + strand at 74.292 kb on - strand at 74.292 kb on - strand at 74.318 kb on + strand at 74.318 kb on + strand at 74.457 kb on + strand at 74.457 kb on + strand at 74.457 kb on + strand at 74.458 kb on - strand at 74.458 kb on - strand at 74.458 kb on - strand at 74.458 kb on - strand at 74.458 kb on - strand at 74.458 kb on - strand at 74.459 kb on + strand at 74.460 kb on - strand at 74.554 kb on + strand at 74.555 kb on - strand at 74.644 kb on + strand, within SMa0137 at 74.670 kb on - strand, within SMa0137 at 74.711 kb on - strand, within SMa0137 at 74.718 kb on + strand, within SMa0137 at 74.719 kb on - strand, within SMa0137 at 74.720 kb on + strand, within SMa0137 at 74.720 kb on + strand, within SMa0137 at 74.721 kb on - strand, within SMa0137 at 74.769 kb on + strand, within SMa0137 at 74.902 kb on + strand, within SMa0137 at 74.939 kb on - strand, within SMa0137 at 74.939 kb on - strand, within SMa0137 at 74.939 kb on - strand, within SMa0137 at 74.964 kb on - strand, within SMa0137 at 74.964 kb on - strand, within SMa0137 at 74.974 kb on - strand, within SMa0137 at 75.023 kb on + strand, within SMa0137 at 75.080 kb on + strand, within SMa0137 at 75.081 kb on - strand, within SMa0137 at 75.081 kb on - strand, within SMa0137 at 75.081 kb on - strand, within SMa0137 at 75.081 kb on - strand, within SMa0137 at 75.115 kb on - strand, within SMa0137 at 75.119 kb on + strand, within SMa0137 at 75.119 kb on + strand, within SMa0137 at 75.120 kb on - strand, within SMa0137 at 75.120 kb on - strand, within SMa0137
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 71,292 + SMa0134 0.37 -1.1 71,293 - SMa0134 0.37 +1.4 71,420 + SMa0134 0.58 -0.3 71,420 + SMa0134 0.58 +0.2 71,496 - SMa0134 0.71 +1.2 71,496 - SMa0134 0.71 +0.9 71,640 + -1.3 71,660 + -1.5 71,660 + +0.5 71,672 - +1.2 71,714 - -0.3 71,714 - -0.2 71,725 - +0.2 71,828 + SMa5002 0.37 -1.0 71,828 + SMa5002 0.37 -0.3 71,828 + SMa5002 0.37 -2.5 71,828 + SMa5002 0.37 -0.5 71,829 - SMa5002 0.37 -1.0 71,926 - SMa5002 0.68 -0.7 72,015 + -0.9 72,032 + -0.4 72,106 + -0.7 72,107 - +0.9 72,107 - -0.0 72,112 + +0.1 72,200 - +0.7 72,203 + -0.4 72,204 - +0.9 72,204 - -0.1 72,204 - +1.3 72,424 + +0.2 72,424 + +0.2 72,425 - -0.1 72,590 + SMa0136 0.16 -1.8 72,590 + SMa0136 0.16 +0.5 72,591 - SMa0136 0.16 -2.4 72,631 + SMa0136 0.18 -0.4 72,632 - SMa0136 0.18 +0.3 72,632 - SMa0136 0.18 -0.3 72,632 - SMa0136 0.18 -1.1 72,638 - SMa0136 0.18 -0.1 72,638 - SMa0136 0.18 -0.4 72,638 - SMa0136 0.18 -0.2 73,094 + SMa0136 0.41 -0.9 73,094 + SMa0136 0.41 -1.2 73,130 + SMa0136 0.43 +0.3 73,130 + SMa0136 0.43 +0.8 73,147 + SMa0136 0.43 -0.5 73,148 - SMa0136 0.43 -0.2 73,150 - SMa0136 0.44 -0.4 73,489 + SMa0136 0.60 -0.2 73,489 + SMa0136 0.60 -0.2 73,489 + SMa0136 0.60 -0.7 73,489 + SMa0136 0.60 -2.4 73,558 + SMa0136 0.64 -0.4 73,559 - SMa0136 0.64 -2.4 73,559 - SMa0136 0.64 -0.6 73,559 - SMa0136 0.64 -0.2 73,559 - SMa0136 0.64 +0.5 73,574 - SMa0136 0.65 +0.4 73,761 + SMa0136 0.74 -0.5 73,780 + SMa0136 0.75 -0.4 73,934 + SMa0136 0.82 +2.5 73,935 - SMa0136 0.83 +0.7 73,935 - SMa0136 0.83 +0.3 74,013 + SMa0136 0.86 +0.1 74,019 - SMa0136 0.87 -0.2 74,035 - SMa0136 0.87 -0.6 74,035 - SMa0136 0.87 -1.1 74,141 + -0.1 74,285 - +0.3 74,285 - +0.4 74,291 + +1.2 74,291 + +0.4 74,291 + -1.3 74,292 - -0.5 74,292 - -0.1 74,318 + -0.3 74,318 + -1.0 74,457 + +0.3 74,457 + +2.5 74,457 + -0.4 74,458 - -0.1 74,458 - -2.6 74,458 - +0.7 74,458 - +0.5 74,458 - -1.2 74,458 - -1.4 74,459 + +1.3 74,460 - +1.0 74,554 + -2.2 74,555 - -1.8 74,644 + SMa0137 0.12 +1.3 74,670 - SMa0137 0.13 -0.5 74,711 - SMa0137 0.15 -2.0 74,718 + SMa0137 0.15 -1.1 74,719 - SMa0137 0.15 +0.5 74,720 + SMa0137 0.16 +1.1 74,720 + SMa0137 0.16 -0.1 74,721 - SMa0137 0.16 -0.6 74,769 + SMa0137 0.18 -0.1 74,902 + SMa0137 0.24 +0.3 74,939 - SMa0137 0.25 -0.6 74,939 - SMa0137 0.25 -0.0 74,939 - SMa0137 0.25 -0.3 74,964 - SMa0137 0.27 -0.6 74,964 - SMa0137 0.27 -0.0 74,974 - SMa0137 0.27 -0.1 75,023 + SMa0137 0.29 +1.3 75,080 + SMa0137 0.32 +2.3 75,081 - SMa0137 0.32 +1.3 75,081 - SMa0137 0.32 +1.1 75,081 - SMa0137 0.32 -2.0 75,081 - SMa0137 0.32 +0.1 75,115 - SMa0137 0.33 -0.1 75,119 + SMa0137 0.34 +0.2 75,119 + SMa0137 0.34 -1.8 75,120 - SMa0137 0.34 -1.3 75,120 - SMa0137 0.34 +0.2
Or see this region's nucleotide sequence