Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20073

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20072 and SM_b20073 are separated by 162 nucleotidesSM_b20073 and SM_b20074 are separated by 195 nucleotidesSM_b20074 and SM_b20075 are separated by 48 nucleotidesSM_b20075 and SM_b20076 are separated by 98 nucleotides SM_b20072: SM_b20072 - rhizopine binding protein, at 81,239 to 82,168 _b20072 SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188 _b20073 SM_b20074: SM_b20074 - hypothetical protein, at 83,384 to 83,626 _b20074 SM_b20075: SM_b20075 - hypothetical protein, at 83,675 to 83,866 _b20075 SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981 _b20076 Position (kb) 82 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 81.392 kb on + strand, within SM_b20072at 81.392 kb on + strand, within SM_b20072at 81.393 kb on - strand, within SM_b20072at 81.721 kb on - strand, within SM_b20072at 81.853 kb on - strand, within SM_b20072at 81.853 kb on - strand, within SM_b20072at 82.157 kb on + strandat 82.157 kb on + strandat 82.158 kb on - strandat 82.158 kb on - strandat 82.172 kb on + strandat 82.278 kb on + strandat 82.279 kb on - strandat 82.279 kb on - strandat 82.281 kb on - strandat 82.380 kb on + strandat 82.381 kb on - strandat 82.381 kb on - strandat 82.381 kb on - strandat 82.450 kb on + strand, within SM_b20073at 82.450 kb on + strand, within SM_b20073at 82.451 kb on - strand, within SM_b20073at 82.547 kb on + strand, within SM_b20073at 82.548 kb on - strand, within SM_b20073at 82.617 kb on + strand, within SM_b20073at 82.618 kb on - strand, within SM_b20073at 82.716 kb on + strand, within SM_b20073at 82.716 kb on + strand, within SM_b20073at 82.971 kb on + strand, within SM_b20073at 82.971 kb on + strand, within SM_b20073at 82.978 kb on + strand, within SM_b20073at 82.978 kb on + strand, within SM_b20073at 83.268 kb on - strandat 83.380 kb on + strandat 83.380 kb on + strandat 83.381 kb on - strandat 83.555 kb on + strand, within SM_b20074at 83.555 kb on + strand, within SM_b20074at 83.555 kb on + strand, within SM_b20074at 83.555 kb on + strand, within SM_b20074at 83.556 kb on - strand, within SM_b20074at 83.556 kb on - strand, within SM_b20074at 83.556 kb on - strand, within SM_b20074at 83.759 kb on + strand, within SM_b20075at 83.760 kb on - strand, within SM_b20075at 83.927 kb on + strandat 83.927 kb on + strandat 83.928 kb on - strandat 83.928 kb on - strandat 83.964 kb on + strandat 83.965 kb on - strandat 83.965 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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81,392 + SM_b20072 0.16 +0.7
81,392 + SM_b20072 0.16 -0.6
81,393 - SM_b20072 0.17 +2.0
81,721 - SM_b20072 0.52 -0.3
81,853 - SM_b20072 0.66 -1.2
81,853 - SM_b20072 0.66 -0.7
82,157 + +1.1
82,157 + -0.5
82,158 - +0.8
82,158 - +0.1
82,172 + -0.4
82,278 + +1.6
82,279 - -0.4
82,279 - +0.9
82,281 - -0.4
82,380 + +0.3
82,381 - +1.6
82,381 - -0.9
82,381 - +0.0
82,450 + SM_b20073 0.14 +1.0
82,450 + SM_b20073 0.14 +0.3
82,451 - SM_b20073 0.14 +0.8
82,547 + SM_b20073 0.25 +0.9
82,548 - SM_b20073 0.25 +0.4
82,617 + SM_b20073 0.33 +4.9
82,618 - SM_b20073 0.33 +0.1
82,716 + SM_b20073 0.45 -0.2
82,716 + SM_b20073 0.45 -0.0
82,971 + SM_b20073 0.75 -0.1
82,971 + SM_b20073 0.75 +3.9
82,978 + SM_b20073 0.75 -0.7
82,978 + SM_b20073 0.75 +0.2
83,268 - -0.3
83,380 + +0.2
83,380 + -0.1
83,381 - +1.0
83,555 + SM_b20074 0.70 +1.0
83,555 + SM_b20074 0.70 -1.6
83,555 + SM_b20074 0.70 -0.3
83,555 + SM_b20074 0.70 +0.5
83,556 - SM_b20074 0.71 -0.6
83,556 - SM_b20074 0.71 +0.1
83,556 - SM_b20074 0.71 -1.9
83,759 + SM_b20075 0.44 +0.9
83,760 - SM_b20075 0.44 +1.2
83,927 + -3.1
83,927 + -0.4
83,928 - +0.4
83,928 - -1.0
83,964 + +1.9
83,965 - -0.0
83,965 - +0.3

Or see this region's nucleotide sequence