Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_804

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_803 and Pf1N1B4_804 are separated by 144 nucleotidesPf1N1B4_804 and Pf1N1B4_805 are separated by 34 nucleotides Pf1N1B4_803 - Membrane carboxypeptidase (penicillin-binding protein), at 916,810 to 919,224 _803 Pf1N1B4_804 - hypothetical protein, at 919,369 to 921,210 _804 Pf1N1B4_805 - hypothetical protein, at 921,245 to 922,516 _805 Position (kb) 919 920 921 922Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 918.409 kb on - strand, within Pf1N1B4_803at 918.469 kb on + strand, within Pf1N1B4_803at 918.470 kb on - strand, within Pf1N1B4_803at 918.470 kb on - strand, within Pf1N1B4_803at 918.732 kb on + strand, within Pf1N1B4_803at 918.732 kb on + strand, within Pf1N1B4_803at 918.733 kb on - strand, within Pf1N1B4_803at 919.003 kb on + strandat 919.003 kb on + strandat 919.003 kb on + strandat 919.003 kb on + strandat 919.003 kb on + strandat 919.003 kb on + strandat 919.004 kb on - strandat 919.004 kb on - strandat 919.004 kb on - strandat 919.004 kb on - strandat 919.004 kb on - strandat 919.004 kb on - strandat 919.004 kb on - strandat 919.004 kb on - strandat 919.004 kb on - strandat 919.015 kb on - strandat 919.039 kb on + strandat 919.039 kb on + strandat 919.039 kb on + strandat 919.040 kb on - strandat 919.040 kb on - strandat 919.040 kb on - strandat 919.129 kb on + strandat 919.130 kb on - strandat 919.232 kb on + strandat 919.232 kb on + strandat 919.233 kb on - strandat 919.233 kb on - strandat 919.233 kb on - strandat 919.241 kb on - strandat 919.259 kb on - strandat 919.299 kb on + strandat 919.299 kb on + strandat 919.300 kb on - strandat 919.332 kb on - strandat 919.502 kb on + strandat 919.503 kb on - strandat 919.698 kb on + strand, within Pf1N1B4_804at 919.698 kb on + strand, within Pf1N1B4_804at 919.711 kb on + strand, within Pf1N1B4_804at 919.808 kb on + strand, within Pf1N1B4_804at 920.188 kb on + strandat 920.188 kb on + strand, within Pf1N1B4_804at 920.188 kb on + strand, within Pf1N1B4_804at 920.188 kb on + strand, within Pf1N1B4_804at 920.189 kb on - strand, within Pf1N1B4_804at 920.189 kb on - strand, within Pf1N1B4_804at 920.189 kb on - strand, within Pf1N1B4_804at 920.189 kb on - strand, within Pf1N1B4_804at 920.189 kb on - strand, within Pf1N1B4_804at 920.189 kb on - strandat 920.189 kb on - strand, within Pf1N1B4_804at 920.191 kb on + strandat 920.191 kb on + strand, within Pf1N1B4_804at 920.191 kb on + strand, within Pf1N1B4_804at 920.191 kb on + strand, within Pf1N1B4_804at 920.191 kb on + strand, within Pf1N1B4_804at 920.191 kb on + strand, within Pf1N1B4_804at 920.192 kb on - strand, within Pf1N1B4_804at 920.192 kb on - strand, within Pf1N1B4_804at 920.192 kb on - strand, within Pf1N1B4_804at 920.192 kb on - strand, within Pf1N1B4_804at 920.192 kb on - strand, within Pf1N1B4_804at 920.192 kb on - strand, within Pf1N1B4_804at 920.192 kb on - strand, within Pf1N1B4_804at 920.284 kb on + strand, within Pf1N1B4_804at 920.284 kb on + strand, within Pf1N1B4_804at 920.284 kb on + strand, within Pf1N1B4_804at 920.284 kb on + strand, within Pf1N1B4_804at 920.285 kb on - strand, within Pf1N1B4_804at 920.285 kb on - strand, within Pf1N1B4_804at 920.285 kb on - strand, within Pf1N1B4_804at 920.285 kb on - strand, within Pf1N1B4_804at 920.596 kb on + strand, within Pf1N1B4_804at 920.642 kb on - strand, within Pf1N1B4_804at 920.833 kb on + strand, within Pf1N1B4_804at 920.833 kb on + strand, within Pf1N1B4_804at 920.834 kb on - strand, within Pf1N1B4_804at 920.834 kb on - strand, within Pf1N1B4_804at 920.918 kb on + strand, within Pf1N1B4_804at 920.918 kb on + strand, within Pf1N1B4_804at 920.918 kb on + strand, within Pf1N1B4_804at 920.918 kb on + strand, within Pf1N1B4_804at 920.919 kb on - strand, within Pf1N1B4_804at 920.919 kb on - strand, within Pf1N1B4_804at 920.919 kb on - strandat 920.919 kb on - strand, within Pf1N1B4_804at 920.919 kb on - strandat 920.919 kb on - strand, within Pf1N1B4_804at 921.416 kb on + strand, within Pf1N1B4_805at 921.416 kb on + strand, within Pf1N1B4_805at 921.416 kb on + strand, within Pf1N1B4_805at 921.416 kb on + strand, within Pf1N1B4_805at 921.416 kb on + strand, within Pf1N1B4_805at 921.417 kb on - strand, within Pf1N1B4_805at 921.417 kb on - strand, within Pf1N1B4_805at 921.476 kb on + strand, within Pf1N1B4_805at 921.476 kb on + strand, within Pf1N1B4_805at 921.476 kb on + strand, within Pf1N1B4_805at 921.476 kb on + strand, within Pf1N1B4_805at 921.477 kb on - strand, within Pf1N1B4_805at 921.645 kb on - strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.825 kb on - strand, within Pf1N1B4_805at 921.838 kb on + strand, within Pf1N1B4_805at 921.839 kb on - strand, within Pf1N1B4_805at 922.015 kb on + strand, within Pf1N1B4_805at 922.016 kb on - strand, within Pf1N1B4_805at 922.016 kb on - strand, within Pf1N1B4_805at 922.127 kb on - strand, within Pf1N1B4_805at 922.127 kb on - strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.150 kb on - strand, within Pf1N1B4_805

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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918,409 - Pf1N1B4_803 0.66 +0.5
918,469 + Pf1N1B4_803 0.69 +0.1
918,470 - Pf1N1B4_803 0.69 -2.2
918,470 - Pf1N1B4_803 0.69 +0.1
918,732 + Pf1N1B4_803 0.80 -0.5
918,732 + Pf1N1B4_803 0.80 -0.7
918,733 - Pf1N1B4_803 0.80 +0.4
919,003 + +0.1
919,003 + +0.3
919,003 + -0.6
919,003 + -0.4
919,003 + -1.2
919,003 + +0.1
919,004 - -0.5
919,004 - -1.5
919,004 - +0.3
919,004 - -0.9
919,004 - -1.7
919,004 - -0.5
919,004 - -0.4
919,004 - +1.1
919,004 - +0.2
919,015 - +0.1
919,039 + -0.1
919,039 + +0.1
919,039 + -0.9
919,040 - +1.8
919,040 - -0.7
919,040 - -0.5
919,129 + +0.7
919,130 - +1.4
919,232 + +0.1
919,232 + -0.5
919,233 - -0.3
919,233 - -0.4
919,233 - +0.9
919,241 - +1.2
919,259 - +1.3
919,299 + +0.5
919,299 + +0.2
919,300 - -0.3
919,332 - +0.5
919,502 + -0.7
919,503 - +0.1
919,698 + Pf1N1B4_804 0.18 +0.1
919,698 + Pf1N1B4_804 0.18 +0.3
919,711 + Pf1N1B4_804 0.19 -0.0
919,808 + Pf1N1B4_804 0.24 +0.4
920,188 + +0.5
920,188 + Pf1N1B4_804 0.44 +0.3
920,188 + Pf1N1B4_804 0.44 -1.0
920,188 + Pf1N1B4_804 0.44 +1.1
920,189 - Pf1N1B4_804 0.45 +2.4
920,189 - Pf1N1B4_804 0.45 +0.4
920,189 - Pf1N1B4_804 0.45 -3.3
920,189 - Pf1N1B4_804 0.45 +1.1
920,189 - Pf1N1B4_804 0.45 +0.6
920,189 - -1.5
920,189 - Pf1N1B4_804 0.45 -0.2
920,191 + +1.1
920,191 + Pf1N1B4_804 0.45 -0.1
920,191 + Pf1N1B4_804 0.45 -0.4
920,191 + Pf1N1B4_804 0.45 +0.4
920,191 + Pf1N1B4_804 0.45 +0.1
920,191 + Pf1N1B4_804 0.45 -0.5
920,192 - Pf1N1B4_804 0.45 +0.9
920,192 - Pf1N1B4_804 0.45 +0.8
920,192 - Pf1N1B4_804 0.45 +1.7
920,192 - Pf1N1B4_804 0.45 +0.2
920,192 - Pf1N1B4_804 0.45 +2.0
920,192 - Pf1N1B4_804 0.45 +1.1
920,192 - Pf1N1B4_804 0.45 +1.4
920,284 + Pf1N1B4_804 0.50 -0.5
920,284 + Pf1N1B4_804 0.50 +0.1
920,284 + Pf1N1B4_804 0.50 -0.5
920,284 + Pf1N1B4_804 0.50 -2.2
920,285 - Pf1N1B4_804 0.50 -0.8
920,285 - Pf1N1B4_804 0.50 +0.7
920,285 - Pf1N1B4_804 0.50 +0.1
920,285 - Pf1N1B4_804 0.50 -0.9
920,596 + Pf1N1B4_804 0.67 -2.7
920,642 - Pf1N1B4_804 0.69 -0.4
920,833 + Pf1N1B4_804 0.79 +1.5
920,833 + Pf1N1B4_804 0.79 +0.5
920,834 - Pf1N1B4_804 0.80 +1.2
920,834 - Pf1N1B4_804 0.80 -0.1
920,918 + Pf1N1B4_804 0.84 -1.9
920,918 + Pf1N1B4_804 0.84 -0.5
920,918 + Pf1N1B4_804 0.84 -0.2
920,918 + Pf1N1B4_804 0.84 +0.7
920,919 - Pf1N1B4_804 0.84 +0.7
920,919 - Pf1N1B4_804 0.84 +1.1
920,919 - +2.7
920,919 - Pf1N1B4_804 0.84 +0.1
920,919 - -1.2
920,919 - Pf1N1B4_804 0.84 +0.3
921,416 + Pf1N1B4_805 0.13 +1.1
921,416 + Pf1N1B4_805 0.13 -0.1
921,416 + Pf1N1B4_805 0.13 -0.2
921,416 + Pf1N1B4_805 0.13 +0.6
921,416 + Pf1N1B4_805 0.13 -0.3
921,417 - Pf1N1B4_805 0.14 +0.7
921,417 - Pf1N1B4_805 0.14 -0.2
921,476 + Pf1N1B4_805 0.18 +0.7
921,476 + Pf1N1B4_805 0.18 +1.1
921,476 + Pf1N1B4_805 0.18 +1.5
921,476 + Pf1N1B4_805 0.18 -2.1
921,477 - Pf1N1B4_805 0.18 +1.4
921,645 - Pf1N1B4_805 0.31 +0.8
921,824 + Pf1N1B4_805 0.46 -1.0
921,824 + Pf1N1B4_805 0.46 -0.5
921,824 + Pf1N1B4_805 0.46 +0.5
921,824 + Pf1N1B4_805 0.46 -1.5
921,825 - Pf1N1B4_805 0.46 +0.1
921,838 + Pf1N1B4_805 0.47 -0.2
921,839 - Pf1N1B4_805 0.47 +0.4
922,015 + Pf1N1B4_805 0.61 -2.1
922,016 - Pf1N1B4_805 0.61 +1.4
922,016 - Pf1N1B4_805 0.61 +1.1
922,127 - Pf1N1B4_805 0.69 +1.1
922,127 - Pf1N1B4_805 0.69 +0.1
922,149 + Pf1N1B4_805 0.71 -1.2
922,149 + Pf1N1B4_805 0.71 -2.7
922,149 + Pf1N1B4_805 0.71 -1.7
922,149 + Pf1N1B4_805 0.71 +2.4
922,149 + Pf1N1B4_805 0.71 +0.3
922,150 - Pf1N1B4_805 0.71 -1.2

Or see this region's nucleotide sequence