Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6040 and Pf1N1B4_6041 are separated by 249 nucleotides Pf1N1B4_6041 and Pf1N1B4_6042 are separated by 194 nucleotides Pf1N1B4_6042 and Pf1N1B4_6043 are separated by 113 nucleotides
Pf1N1B4_6040 - FIG00956858: hypothetical protein, at 503,778 to 504,143
_6040
Pf1N1B4_6041 - Carbon storage regulator, at 504,393 to 504,587
_6041
Pf1N1B4_6042 - Probable transmembrane protein, at 504,782 to 505,237
_6042
Pf1N1B4_6043 - membrane protein, putative, at 505,351 to 506,565
_6043
Position (kb) 504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 503.889 kb on - strand, within Pf1N1B4_6040 at 503.889 kb on - strand, within Pf1N1B4_6040 at 503.948 kb on + strand at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 504.115 kb on - strand at 504.115 kb on - strand at 504.251 kb on - strand at 504.251 kb on - strand at 504.252 kb on + strand at 504.252 kb on + strand at 504.252 kb on + strand at 504.252 kb on + strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.257 kb on - strand at 504.271 kb on - strand at 504.271 kb on - strand at 504.324 kb on - strand at 504.324 kb on - strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.331 kb on - strand at 504.331 kb on - strand at 504.334 kb on + strand at 504.334 kb on + strand at 504.334 kb on + strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.369 kb on + strand at 504.370 kb on - strand at 504.400 kb on + strand at 504.427 kb on + strand, within Pf1N1B4_6041 at 504.428 kb on - strand, within Pf1N1B4_6041 at 504.446 kb on + strand, within Pf1N1B4_6041 at 504.447 kb on - strand, within Pf1N1B4_6041 at 504.711 kb on - strand at 504.854 kb on - strand, within Pf1N1B4_6042 at 504.872 kb on + strand at 504.873 kb on - strand, within Pf1N1B4_6042 at 504.873 kb on - strand, within Pf1N1B4_6042 at 504.873 kb on - strand, within Pf1N1B4_6042 at 505.015 kb on - strand, within Pf1N1B4_6042 at 505.015 kb on - strand, within Pf1N1B4_6042 at 505.018 kb on - strand, within Pf1N1B4_6042 at 505.018 kb on - strand, within Pf1N1B4_6042 at 505.018 kb on - strand, within Pf1N1B4_6042 at 505.152 kb on - strand, within Pf1N1B4_6042 at 505.152 kb on - strand, within Pf1N1B4_6042 at 505.244 kb on - strand at 505.244 kb on - strand at 505.244 kb on - strand at 505.244 kb on - strand at 505.244 kb on - strand at 505.244 kb on - strand at 505.251 kb on - strand at 505.273 kb on + strand at 505.273 kb on + strand at 505.274 kb on - strand at 505.274 kb on - strand at 505.274 kb on - strand at 505.274 kb on - strand at 505.278 kb on + strand at 505.281 kb on + strand at 505.281 kb on + strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.297 kb on - strand at 505.297 kb on - strand at 505.297 kb on - strand at 505.297 kb on - strand at 505.363 kb on + strand at 505.364 kb on - strand at 505.364 kb on - strand at 505.378 kb on - strand at 505.378 kb on - strand at 505.378 kb on - strand at 505.378 kb on - strand at 505.580 kb on - strand, within Pf1N1B4_6043 at 505.616 kb on - strand, within Pf1N1B4_6043 at 505.637 kb on - strand, within Pf1N1B4_6043 at 505.637 kb on - strand, within Pf1N1B4_6043 at 505.714 kb on + strand at 505.729 kb on + strand, within Pf1N1B4_6043 at 505.730 kb on - strand, within Pf1N1B4_6043 at 505.730 kb on - strand, within Pf1N1B4_6043 at 505.735 kb on + strand, within Pf1N1B4_6043 at 505.736 kb on - strand, within Pf1N1B4_6043 at 505.736 kb on - strand at 505.753 kb on + strand, within Pf1N1B4_6043 at 506.083 kb on + strand, within Pf1N1B4_6043 at 506.084 kb on - strand, within Pf1N1B4_6043 at 506.084 kb on - strand, within Pf1N1B4_6043 at 506.104 kb on + strand, within Pf1N1B4_6043 at 506.104 kb on + strand, within Pf1N1B4_6043 at 506.104 kb on + strand, within Pf1N1B4_6043 at 506.105 kb on - strand, within Pf1N1B4_6043 at 506.105 kb on - strand, within Pf1N1B4_6043 at 506.186 kb on + strand at 506.206 kb on - strand, within Pf1N1B4_6043 at 506.206 kb on - strand, within Pf1N1B4_6043 at 506.206 kb on - strand, within Pf1N1B4_6043 at 506.206 kb on - strand, within Pf1N1B4_6043
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml remove 503,889 - Pf1N1B4_6040 0.30 +0.3 503,889 - Pf1N1B4_6040 0.30 -0.6 503,948 + +0.0 503,949 - Pf1N1B4_6040 0.47 +0.3 503,949 - -0.4 503,949 - Pf1N1B4_6040 0.47 +1.6 503,949 - Pf1N1B4_6040 0.47 -0.0 503,949 - Pf1N1B4_6040 0.47 -1.0 503,949 - Pf1N1B4_6040 0.47 -2.5 503,949 - Pf1N1B4_6040 0.47 -1.0 503,949 - Pf1N1B4_6040 0.47 -1.0 503,949 - Pf1N1B4_6040 0.47 -3.6 503,949 - Pf1N1B4_6040 0.47 +0.9 504,115 - -1.7 504,115 - -1.1 504,251 - -0.3 504,251 - +0.1 504,252 + +1.3 504,252 + +0.6 504,252 + -1.4 504,252 + +1.1 504,253 - +0.0 504,253 - -1.6 504,253 - -1.2 504,253 - -0.9 504,253 - -1.7 504,253 - -1.4 504,253 - -1.7 504,253 - -1.4 504,257 - -2.0 504,271 - -1.0 504,271 - -1.1 504,324 - -0.7 504,324 - -1.0 504,328 + +0.3 504,328 + +0.2 504,328 + -0.4 504,328 + +0.1 504,328 + -2.4 504,328 + -0.1 504,328 + +0.2 504,328 + +1.6 504,329 - +2.2 504,329 - -0.4 504,329 - -1.0 504,329 - -1.0 504,329 - +0.6 504,329 - -1.0 504,331 - -1.2 504,331 - +0.2 504,334 + -0.2 504,334 + -0.3 504,334 + +0.5 504,335 - -1.0 504,335 - +0.2 504,335 - -1.1 504,335 - +0.6 504,335 - -1.4 504,335 - -1.4 504,335 - -1.2 504,335 - -1.2 504,369 + +1.1 504,370 - -0.4 504,400 + -1.0 504,427 + Pf1N1B4_6041 0.17 +0.6 504,428 - Pf1N1B4_6041 0.18 -1.1 504,446 + Pf1N1B4_6041 0.27 +1.6 504,447 - Pf1N1B4_6041 0.28 -1.4 504,711 - -2.5 504,854 - Pf1N1B4_6042 0.16 -0.4 504,872 + +2.2 504,873 - Pf1N1B4_6042 0.20 -1.4 504,873 - Pf1N1B4_6042 0.20 -3.0 504,873 - Pf1N1B4_6042 0.20 -0.6 505,015 - Pf1N1B4_6042 0.51 -0.7 505,015 - Pf1N1B4_6042 0.51 -2.6 505,018 - Pf1N1B4_6042 0.52 -1.2 505,018 - Pf1N1B4_6042 0.52 -0.8 505,018 - Pf1N1B4_6042 0.52 +1.4 505,152 - Pf1N1B4_6042 0.81 +0.6 505,152 - Pf1N1B4_6042 0.81 -0.4 505,244 - -1.0 505,244 - -1.0 505,244 - +0.8 505,244 - -1.4 505,244 - -1.9 505,244 - +1.3 505,251 - +1.2 505,273 + +0.6 505,273 + -0.4 505,274 - +0.9 505,274 - +1.6 505,274 - -1.0 505,274 - -2.0 505,278 + -1.3 505,281 + +1.6 505,281 + -1.4 505,282 - -0.1 505,282 - +0.9 505,282 - -0.7 505,282 - -0.2 505,282 - -2.0 505,282 - +0.3 505,297 - +0.6 505,297 - -1.0 505,297 - -1.0 505,297 - -1.7 505,363 + +0.9 505,364 - +1.6 505,364 - -0.9 505,378 - +1.8 505,378 - -0.7 505,378 - -0.8 505,378 - -0.1 505,580 - Pf1N1B4_6043 0.19 +0.7 505,616 - Pf1N1B4_6043 0.22 -0.2 505,637 - Pf1N1B4_6043 0.24 +0.0 505,637 - Pf1N1B4_6043 0.24 -1.0 505,714 + +0.6 505,729 + Pf1N1B4_6043 0.31 -2.2 505,730 - Pf1N1B4_6043 0.31 +1.0 505,730 - Pf1N1B4_6043 0.31 -1.9 505,735 + Pf1N1B4_6043 0.32 -0.9 505,736 - Pf1N1B4_6043 0.32 -0.2 505,736 - +1.2 505,753 + Pf1N1B4_6043 0.33 +0.6 506,083 + Pf1N1B4_6043 0.60 -0.7 506,084 - Pf1N1B4_6043 0.60 -0.4 506,084 - Pf1N1B4_6043 0.60 +0.6 506,104 + Pf1N1B4_6043 0.62 -1.7 506,104 + Pf1N1B4_6043 0.62 -1.7 506,104 + Pf1N1B4_6043 0.62 +0.6 506,105 - Pf1N1B4_6043 0.62 -0.4 506,105 - Pf1N1B4_6043 0.62 -0.1 506,186 + -0.4 506,206 - Pf1N1B4_6043 0.70 +0.6 506,206 - Pf1N1B4_6043 0.70 +2.2 506,206 - Pf1N1B4_6043 0.70 +0.6 506,206 - Pf1N1B4_6043 0.70 -0.6
Or see this region's nucleotide sequence