Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3935 and Pf1N1B4_3936 are separated by 3 nucleotides Pf1N1B4_3936 and Pf1N1B4_3937 are separated by 181 nucleotides Pf1N1B4_3937 and Pf1N1B4_3938 are separated by 28 nucleotides
Pf1N1B4_3935 - Major facilitator family transporter, at 4,372,211 to 4,373,365
_3935
Pf1N1B4_3936 - Transcriptional regulator, LysR family, at 4,373,369 to 4,374,268
_3936
Pf1N1B4_3937 - Membrane protein involved in colicin uptake, at 4,374,450 to 4,374,692
_3937
Pf1N1B4_3938 - Integral membrane protein TerC, at 4,374,721 to 4,375,470
_3938
Position (kb)
4373
4374
4375 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4372.391 kb on + strand, within Pf1N1B4_3935 at 4372.581 kb on - strand, within Pf1N1B4_3935 at 4372.735 kb on + strand at 4372.735 kb on + strand at 4372.736 kb on - strand, within Pf1N1B4_3935 at 4372.740 kb on - strand at 4372.874 kb on + strand, within Pf1N1B4_3935 at 4372.874 kb on + strand, within Pf1N1B4_3935 at 4372.874 kb on + strand, within Pf1N1B4_3935 at 4372.875 kb on - strand, within Pf1N1B4_3935 at 4373.101 kb on + strand, within Pf1N1B4_3935 at 4373.457 kb on + strand at 4374.032 kb on + strand, within Pf1N1B4_3936 at 4374.033 kb on - strand, within Pf1N1B4_3936 at 4374.033 kb on - strand, within Pf1N1B4_3936 at 4374.138 kb on + strand, within Pf1N1B4_3936 at 4374.139 kb on - strand, within Pf1N1B4_3936 at 4374.139 kb on - strand, within Pf1N1B4_3936 at 4374.243 kb on + strand at 4374.244 kb on - strand at 4374.244 kb on - strand at 4374.314 kb on + strand at 4374.387 kb on + strand at 4374.388 kb on - strand at 4374.388 kb on - strand at 4374.458 kb on + strand at 4374.458 kb on + strand at 4374.458 kb on + strand at 4374.459 kb on - strand at 4374.459 kb on - strand at 4374.459 kb on - strand at 4374.690 kb on + strand at 4374.690 kb on + strand at 4374.699 kb on + strand at 4374.727 kb on + strand at 4374.734 kb on + strand at 4374.734 kb on + strand at 4374.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml remove 4,372,391 + Pf1N1B4_3935 0.16 +0.2 4,372,581 - Pf1N1B4_3935 0.32 -1.1 4,372,735 + -0.8 4,372,735 + +0.7 4,372,736 - Pf1N1B4_3935 0.45 +1.2 4,372,740 - -1.3 4,372,874 + Pf1N1B4_3935 0.57 -1.1 4,372,874 + Pf1N1B4_3935 0.57 +1.7 4,372,874 + Pf1N1B4_3935 0.57 +0.7 4,372,875 - Pf1N1B4_3935 0.57 -0.7 4,373,101 + Pf1N1B4_3935 0.77 -1.3 4,373,457 + +2.3 4,374,032 + Pf1N1B4_3936 0.74 +0.2 4,374,033 - Pf1N1B4_3936 0.74 +1.5 4,374,033 - Pf1N1B4_3936 0.74 -0.1 4,374,138 + Pf1N1B4_3936 0.85 +1.7 4,374,139 - Pf1N1B4_3936 0.86 -0.3 4,374,139 - Pf1N1B4_3936 0.86 -1.6 4,374,243 + -1.3 4,374,244 - -0.5 4,374,244 - -0.4 4,374,314 + +0.0 4,374,387 + +0.2 4,374,388 - -1.1 4,374,388 - +0.5 4,374,458 + -0.7 4,374,458 + -1.4 4,374,458 + +0.5 4,374,459 - +0.4 4,374,459 - +2.3 4,374,459 - -0.4 4,374,690 + +0.4 4,374,690 + -1.4 4,374,699 + -1.3 4,374,727 + -0.8 4,374,734 + -1.8 4,374,734 + -0.5 4,374,734 + -0.8
Or see this region's nucleotide sequence