Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1387 and Pf1N1B4_1388 are separated by 192 nucleotides Pf1N1B4_1388 and Pf1N1B4_1389 are separated by 344 nucleotides
Pf1N1B4_1387 - NAD synthetase (EC 6.3.1.5), at 1,587,794 to 1,588,621
_1387
Pf1N1B4_1388 - Azurin, at 1,588,814 to 1,589,260
_1388
Pf1N1B4_1389 - Lysine decarboxylase family, at 1,589,605 to 1,590,192
_1389
Position (kb)
1588
1589
1590 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1588.755 kb on - strand at 1588.811 kb on + strand at 1588.879 kb on - strand, within Pf1N1B4_1388 at 1588.986 kb on + strand, within Pf1N1B4_1388 at 1588.986 kb on + strand, within Pf1N1B4_1388 at 1588.986 kb on + strand, within Pf1N1B4_1388 at 1589.062 kb on + strand, within Pf1N1B4_1388 at 1589.063 kb on - strand, within Pf1N1B4_1388 at 1589.370 kb on - strand at 1589.370 kb on - strand at 1589.391 kb on + strand at 1589.391 kb on + strand at 1589.392 kb on - strand at 1589.392 kb on - strand at 1589.418 kb on - strand at 1589.495 kb on + strand at 1589.543 kb on + strand at 1589.572 kb on + strand at 1589.572 kb on + strand at 1589.573 kb on - strand at 1589.573 kb on - strand at 1589.599 kb on + strand at 1589.599 kb on + strand at 1589.600 kb on - strand at 1589.600 kb on - strand at 1589.600 kb on - strand at 1589.613 kb on - strand at 1589.627 kb on + strand at 1589.652 kb on + strand at 1589.662 kb on + strand at 1589.913 kb on + strand, within Pf1N1B4_1389 at 1589.913 kb on + strand, within Pf1N1B4_1389 at 1589.914 kb on - strand, within Pf1N1B4_1389 at 1590.014 kb on + strand, within Pf1N1B4_1389 at 1590.014 kb on + strand, within Pf1N1B4_1389 at 1590.015 kb on - strand, within Pf1N1B4_1389 at 1590.055 kb on - strand, within Pf1N1B4_1389 at 1590.055 kb on - strand, within Pf1N1B4_1389
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml remove 1,588,755 - -0.7 1,588,811 + +0.7 1,588,879 - Pf1N1B4_1388 0.15 +1.1 1,588,986 + Pf1N1B4_1388 0.38 +0.7 1,588,986 + Pf1N1B4_1388 0.38 +1.2 1,588,986 + Pf1N1B4_1388 0.38 -0.1 1,589,062 + Pf1N1B4_1388 0.55 +0.5 1,589,063 - Pf1N1B4_1388 0.56 +1.2 1,589,370 - -0.8 1,589,370 - +0.2 1,589,391 + +0.1 1,589,391 + -0.1 1,589,392 - +0.8 1,589,392 - +1.2 1,589,418 - -0.5 1,589,495 + +0.0 1,589,543 + +1.2 1,589,572 + +0.6 1,589,572 + -0.8 1,589,573 - -0.3 1,589,573 - +0.0 1,589,599 + +0.3 1,589,599 + +0.7 1,589,600 - -2.8 1,589,600 - -0.2 1,589,600 - -1.1 1,589,613 - +0.7 1,589,627 + -0.3 1,589,652 + -0.4 1,589,662 + +0.5 1,589,913 + Pf1N1B4_1389 0.52 -0.8 1,589,913 + Pf1N1B4_1389 0.52 -0.1 1,589,914 - Pf1N1B4_1389 0.53 -0.3 1,590,014 + Pf1N1B4_1389 0.70 +0.7 1,590,014 + Pf1N1B4_1389 0.70 +0.4 1,590,015 - Pf1N1B4_1389 0.70 +0.8 1,590,055 - Pf1N1B4_1389 0.77 -0.6 1,590,055 - Pf1N1B4_1389 0.77 +0.9
Or see this region's nucleotide sequence