Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06435

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06425 and HSERO_RS06430 are separated by 45 nucleotidesHSERO_RS06430 and HSERO_RS06435 are separated by 59 nucleotidesHSERO_RS06435 and HSERO_RS06440 are separated by 37 nucleotides HSERO_RS06425: HSERO_RS06425 - amine oxidase N, at 1,450,438 to 1,451,790 _RS06425 HSERO_RS06430: HSERO_RS06430 - hypothetical protein, at 1,451,836 to 1,452,222 _RS06430 HSERO_RS06435: HSERO_RS06435 - amino-acid transporter transmembrane protein, at 1,452,282 to 1,453,733 _RS06435 HSERO_RS06440: HSERO_RS06440 - membrane protein, at 1,453,771 to 1,454,880 _RS06440 Position (kb) 1452 1453 1454Strain fitness (log2 ratio) -1 0 1at 1451.429 kb on - strand, within HSERO_RS06425at 1451.692 kb on + strandat 1451.714 kb on + strandat 1451.759 kb on + strandat 1451.785 kb on + strandat 1451.889 kb on - strand, within HSERO_RS06430at 1452.331 kb on - strandat 1452.415 kb on + strandat 1452.423 kb on - strandat 1452.573 kb on + strand, within HSERO_RS06435at 1452.581 kb on - strand, within HSERO_RS06435at 1452.725 kb on - strand, within HSERO_RS06435at 1452.757 kb on + strand, within HSERO_RS06435at 1452.804 kb on - strand, within HSERO_RS06435at 1452.859 kb on + strand, within HSERO_RS06435at 1452.996 kb on - strand, within HSERO_RS06435at 1453.034 kb on + strand, within HSERO_RS06435at 1453.034 kb on + strand, within HSERO_RS06435at 1453.042 kb on - strand, within HSERO_RS06435at 1453.089 kb on + strand, within HSERO_RS06435at 1453.265 kb on + strandat 1453.265 kb on + strand, within HSERO_RS06435at 1453.273 kb on - strand, within HSERO_RS06435at 1453.288 kb on - strandat 1453.361 kb on - strand, within HSERO_RS06435at 1453.375 kb on + strand, within HSERO_RS06435at 1453.388 kb on - strand, within HSERO_RS06435at 1453.446 kb on + strand, within HSERO_RS06435at 1453.456 kb on + strand, within HSERO_RS06435at 1453.914 kb on - strand, within HSERO_RS06440at 1454.010 kb on + strand, within HSERO_RS06440at 1454.021 kb on + strand, within HSERO_RS06440at 1454.036 kb on - strand, within HSERO_RS06440at 1454.045 kb on + strand, within HSERO_RS06440at 1454.068 kb on - strand, within HSERO_RS06440at 1454.077 kb on + strand, within HSERO_RS06440at 1454.085 kb on - strand, within HSERO_RS06440at 1454.086 kb on - strand, within HSERO_RS06440at 1454.216 kb on + strand, within HSERO_RS06440at 1454.248 kb on + strand, within HSERO_RS06440at 1454.363 kb on + strand, within HSERO_RS06440at 1454.499 kb on - strand, within HSERO_RS06440at 1454.536 kb on + strand, within HSERO_RS06440at 1454.539 kb on - strand, within HSERO_RS06440at 1454.563 kb on + strand, within HSERO_RS06440at 1454.715 kb on + strand, within HSERO_RS06440

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,451,429 - HSERO_RS06425 0.73 +0.2
1,451,692 + +0.5
1,451,714 + +0.5
1,451,759 + -0.0
1,451,785 + +0.0
1,451,889 - HSERO_RS06430 0.14 -0.3
1,452,331 - -0.0
1,452,415 + +0.4
1,452,423 - +0.1
1,452,573 + HSERO_RS06435 0.20 +0.3
1,452,581 - HSERO_RS06435 0.21 -0.4
1,452,725 - HSERO_RS06435 0.31 -0.4
1,452,757 + HSERO_RS06435 0.33 -0.1
1,452,804 - HSERO_RS06435 0.36 -1.4
1,452,859 + HSERO_RS06435 0.40 +0.7
1,452,996 - HSERO_RS06435 0.49 -0.3
1,453,034 + HSERO_RS06435 0.52 -0.2
1,453,034 + HSERO_RS06435 0.52 -0.0
1,453,042 - HSERO_RS06435 0.52 +0.6
1,453,089 + HSERO_RS06435 0.56 +0.4
1,453,265 + -0.5
1,453,265 + HSERO_RS06435 0.68 +1.3
1,453,273 - HSERO_RS06435 0.68 +0.1
1,453,288 - +1.2
1,453,361 - HSERO_RS06435 0.74 -0.2
1,453,375 + HSERO_RS06435 0.75 -0.6
1,453,388 - HSERO_RS06435 0.76 -0.0
1,453,446 + HSERO_RS06435 0.80 +0.1
1,453,456 + HSERO_RS06435 0.81 +0.0
1,453,914 - HSERO_RS06440 0.13 -0.4
1,454,010 + HSERO_RS06440 0.22 +0.2
1,454,021 + HSERO_RS06440 0.23 +0.5
1,454,036 - HSERO_RS06440 0.24 +1.1
1,454,045 + HSERO_RS06440 0.25 +0.6
1,454,068 - HSERO_RS06440 0.27 +0.3
1,454,077 + HSERO_RS06440 0.28 -0.8
1,454,085 - HSERO_RS06440 0.28 +0.2
1,454,086 - HSERO_RS06440 0.28 +0.0
1,454,216 + HSERO_RS06440 0.40 -0.1
1,454,248 + HSERO_RS06440 0.43 -0.6
1,454,363 + HSERO_RS06440 0.53 +1.2
1,454,499 - HSERO_RS06440 0.66 +0.7
1,454,536 + HSERO_RS06440 0.69 -0.1
1,454,539 - HSERO_RS06440 0.69 +0.7
1,454,563 + HSERO_RS06440 0.71 +0.1
1,454,715 + HSERO_RS06440 0.85 -0.3

Or see this region's nucleotide sequence