Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03469 and CCNA_03909 overlap by 4 nucleotides CCNA_03909 and CCNA_03471 are separated by 141 nucleotides
CCNA_03469: CCNA_03469 - arginyl-tRNA synthetase, at 3,635,003 to 3,636,805
_03469
CCNA_03909: CCNA_03909 - hypothetical protein, at 3,636,802 to 3,637,524
_03909
CCNA_03471: CCNA_03471 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,637,666 to 3,638,625
_03471
Position (kb)
3636
3637
3638 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3636.829 kb on + strand at 3636.837 kb on - strand at 3636.837 kb on - strand at 3636.844 kb on + strand at 3636.847 kb on - strand at 3636.849 kb on + strand at 3636.852 kb on - strand at 3636.853 kb on - strand at 3636.857 kb on - strand at 3636.873 kb on + strand at 3636.881 kb on - strand, within CCNA_03909 at 3636.886 kb on - strand, within CCNA_03909 at 3636.941 kb on - strand, within CCNA_03909 at 3636.941 kb on - strand, within CCNA_03909 at 3636.973 kb on - strand, within CCNA_03909 at 3637.104 kb on + strand, within CCNA_03909 at 3637.168 kb on - strand, within CCNA_03909 at 3637.168 kb on - strand, within CCNA_03909 at 3637.168 kb on - strand, within CCNA_03909 at 3637.224 kb on - strand, within CCNA_03909 at 3637.236 kb on - strand, within CCNA_03909 at 3637.322 kb on - strand, within CCNA_03909 at 3637.322 kb on - strand, within CCNA_03909 at 3637.337 kb on + strand, within CCNA_03909 at 3637.361 kb on + strand, within CCNA_03909 at 3637.369 kb on - strand, within CCNA_03909 at 3637.369 kb on - strand, within CCNA_03909 at 3637.584 kb on - strand at 3637.604 kb on - strand at 3637.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 3,636,829 + -1.6 3,636,837 - +1.6 3,636,837 - +2.0 3,636,844 + -1.4 3,636,847 - +1.5 3,636,849 + -0.2 3,636,852 - +1.8 3,636,853 - +1.5 3,636,857 - +1.3 3,636,873 + -0.9 3,636,881 - CCNA_03909 0.11 +1.0 3,636,886 - CCNA_03909 0.12 +0.7 3,636,941 - CCNA_03909 0.19 -3.1 3,636,941 - CCNA_03909 0.19 -2.6 3,636,973 - CCNA_03909 0.24 +1.2 3,637,104 + CCNA_03909 0.42 -0.8 3,637,168 - CCNA_03909 0.51 -1.4 3,637,168 - CCNA_03909 0.51 -1.7 3,637,168 - CCNA_03909 0.51 -2.2 3,637,224 - CCNA_03909 0.58 -1.5 3,637,236 - CCNA_03909 0.60 -0.0 3,637,322 - CCNA_03909 0.72 -1.4 3,637,322 - CCNA_03909 0.72 -2.0 3,637,337 + CCNA_03909 0.74 +0.6 3,637,361 + CCNA_03909 0.77 +0.2 3,637,369 - CCNA_03909 0.78 -1.6 3,637,369 - CCNA_03909 0.78 -1.4 3,637,584 - -2.8 3,637,604 - -0.3 3,637,634 - -0.3
Or see this region's nucleotide sequence