Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03699 and CCNA_03700 are separated by 78 nucleotides CCNA_03700 and CCNA_03701 are separated by 81 nucleotides CCNA_03701 and CCNA_03702 are separated by 202 nucleotides
CCNA_03699: CCNA_03699 - peptidase, M16 family, at 3,865,772 to 3,868,618
_03699
CCNA_03700: CCNA_03700 - large-conductance mechanosensitive channel, at 3,868,697 to 3,869,116
_03700
CCNA_03701: CCNA_03701 - integration host factor beta-subunit, at 3,869,198 to 3,869,488
_03701
CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400
_03702
Position (kb)
3869
3870 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3868.213 kb on - strand, within CCNA_03699 at 3868.249 kb on - strand, within CCNA_03699 at 3868.249 kb on - strand, within CCNA_03699 at 3868.256 kb on + strand, within CCNA_03699 at 3868.291 kb on - strand, within CCNA_03699 at 3868.340 kb on + strand at 3868.342 kb on + strand at 3868.399 kb on + strand at 3868.411 kb on + strand at 3868.432 kb on + strand at 3868.439 kb on + strand at 3868.440 kb on - strand at 3868.454 kb on - strand at 3868.454 kb on - strand at 3868.456 kb on + strand at 3868.456 kb on + strand at 3868.456 kb on + strand at 3868.457 kb on + strand at 3868.464 kb on - strand at 3868.464 kb on - strand at 3868.464 kb on - strand at 3868.465 kb on - strand at 3868.465 kb on - strand at 3868.474 kb on + strand at 3868.474 kb on + strand at 3868.479 kb on + strand at 3868.487 kb on - strand at 3868.495 kb on + strand at 3868.498 kb on - strand at 3868.498 kb on - strand at 3868.525 kb on + strand at 3868.525 kb on + strand at 3868.525 kb on + strand at 3868.533 kb on - strand at 3868.533 kb on - strand at 3868.533 kb on - strand at 3868.533 kb on - strand at 3868.538 kb on + strand at 3868.540 kb on - strand at 3868.541 kb on - strand at 3868.543 kb on + strand at 3868.543 kb on + strand at 3868.543 kb on + strand at 3868.543 kb on + strand at 3868.543 kb on + strand at 3868.543 kb on + strand at 3868.543 kb on + strand at 3868.543 kb on + strand at 3868.551 kb on - strand at 3868.551 kb on - strand at 3868.551 kb on - strand at 3868.551 kb on - strand at 3868.578 kb on - strand at 3868.599 kb on + strand at 3868.613 kb on + strand at 3868.615 kb on + strand at 3868.621 kb on - strand at 3868.684 kb on + strand at 3868.692 kb on - strand at 3868.704 kb on + strand at 3868.742 kb on + strand, within CCNA_03700 at 3868.774 kb on + strand, within CCNA_03700 at 3868.806 kb on + strand, within CCNA_03700 at 3868.814 kb on - strand, within CCNA_03700 at 3868.883 kb on + strand, within CCNA_03700 at 3869.035 kb on - strand, within CCNA_03700 at 3869.060 kb on - strand, within CCNA_03700 at 3869.064 kb on - strand, within CCNA_03700 at 3869.070 kb on + strand, within CCNA_03700 at 3869.116 kb on + strand at 3869.124 kb on - strand at 3869.128 kb on + strand at 3869.143 kb on - strand at 3869.145 kb on + strand at 3869.151 kb on + strand at 3869.181 kb on - strand at 3869.192 kb on - strand at 3869.192 kb on - strand at 3869.244 kb on + strand, within CCNA_03701 at 3869.277 kb on + strand, within CCNA_03701 at 3869.319 kb on + strand, within CCNA_03701 at 3869.350 kb on + strand, within CCNA_03701 at 3869.473 kb on + strand at 3869.473 kb on + strand at 3869.473 kb on + strand at 3869.473 kb on + strand at 3869.481 kb on - strand at 3869.481 kb on - strand at 3869.481 kb on - strand at 3869.689 kb on + strand at 3870.076 kb on - strand, within CCNA_03702 at 3870.244 kb on - strand, within CCNA_03702
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 3,868,213 - CCNA_03699 0.86 +0.1 3,868,249 - CCNA_03699 0.87 -0.4 3,868,249 - CCNA_03699 0.87 +0.8 3,868,256 + CCNA_03699 0.87 +0.3 3,868,291 - CCNA_03699 0.88 +0.2 3,868,340 + +0.4 3,868,342 + +1.0 3,868,399 + -0.3 3,868,411 + -0.9 3,868,432 + +1.1 3,868,439 + +0.7 3,868,440 - +1.4 3,868,454 - +0.7 3,868,454 - +0.2 3,868,456 + +1.1 3,868,456 + +0.6 3,868,456 + +1.0 3,868,457 + -0.0 3,868,464 - -0.1 3,868,464 - +0.5 3,868,464 - +0.7 3,868,465 - +0.4 3,868,465 - +3.1 3,868,474 + +1.0 3,868,474 + +0.3 3,868,479 + +1.0 3,868,487 - +0.9 3,868,495 + +0.6 3,868,498 - -0.3 3,868,498 - +0.2 3,868,525 + +3.2 3,868,525 + +0.3 3,868,525 + +1.0 3,868,533 - +0.1 3,868,533 - +0.4 3,868,533 - -0.4 3,868,533 - -0.0 3,868,538 + +0.8 3,868,540 - +0.4 3,868,541 - +1.5 3,868,543 + +0.5 3,868,543 + -0.1 3,868,543 + +1.1 3,868,543 + +0.7 3,868,543 + +0.5 3,868,543 + +0.6 3,868,543 + +0.8 3,868,543 + +0.8 3,868,551 - -0.2 3,868,551 - +0.5 3,868,551 - +0.5 3,868,551 - -0.7 3,868,578 - +0.8 3,868,599 + +0.8 3,868,613 + +1.0 3,868,615 + +1.1 3,868,621 - +0.5 3,868,684 + +0.1 3,868,692 - +0.9 3,868,704 + +0.6 3,868,742 + CCNA_03700 0.11 -0.1 3,868,774 + CCNA_03700 0.18 +0.2 3,868,806 + CCNA_03700 0.26 -2.3 3,868,814 - CCNA_03700 0.28 +0.8 3,868,883 + CCNA_03700 0.44 -0.6 3,869,035 - CCNA_03700 0.80 +0.7 3,869,060 - CCNA_03700 0.86 +1.3 3,869,064 - CCNA_03700 0.87 +0.8 3,869,070 + CCNA_03700 0.89 -2.0 3,869,116 + -0.4 3,869,124 - +1.1 3,869,128 + -2.5 3,869,143 - +1.8 3,869,145 + +0.1 3,869,151 + +0.4 3,869,181 - +0.9 3,869,192 - +1.8 3,869,192 - +1.9 3,869,244 + CCNA_03701 0.16 -2.1 3,869,277 + CCNA_03701 0.27 -1.8 3,869,319 + CCNA_03701 0.42 -1.4 3,869,350 + CCNA_03701 0.52 -1.1 3,869,473 + -0.8 3,869,473 + -1.4 3,869,473 + -2.2 3,869,473 + -0.2 3,869,481 - +0.3 3,869,481 - +0.2 3,869,481 - -0.7 3,869,689 + +0.4 3,870,076 - CCNA_03702 0.23 +1.3 3,870,244 - CCNA_03702 0.32 +1.7
Or see this region's nucleotide sequence