Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02295

Experiment: PYE with Carbenicillin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02294 and CCNA_02295 overlap by 22 nucleotidesCCNA_02295 and CCNA_02296 are separated by 9 nucleotides CCNA_02294: CCNA_02294 - argininosuccinate lyase, at 2,441,149 to 2,442,567 _02294 CCNA_02295: CCNA_02295 - hypothetical protein, at 2,442,546 to 2,442,866 _02295 CCNA_02296: CCNA_02296 - diaminopimelate decarboxylase, at 2,442,876 to 2,444,141 _02296 Position (kb) 2442 2443Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2442.561 kb on + strandat 2442.574 kb on - strandat 2442.674 kb on - strand, within CCNA_02295at 2442.698 kb on - strand, within CCNA_02295at 2442.705 kb on + strand, within CCNA_02295at 2442.711 kb on + strand, within CCNA_02295at 2442.715 kb on + strand, within CCNA_02295at 2442.719 kb on - strand, within CCNA_02295at 2442.719 kb on - strand, within CCNA_02295at 2442.795 kb on + strand, within CCNA_02295at 2442.800 kb on + strand, within CCNA_02295at 2443.582 kb on + strand, within CCNA_02296at 2443.715 kb on + strand, within CCNA_02296

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
remove
2,442,561 + +0.3
2,442,574 - +0.1
2,442,674 - CCNA_02295 0.40 -2.5
2,442,698 - CCNA_02295 0.47 +0.4
2,442,705 + CCNA_02295 0.50 -0.2
2,442,711 + CCNA_02295 0.51 +2.8
2,442,715 + CCNA_02295 0.53 +0.8
2,442,719 - CCNA_02295 0.54 +0.2
2,442,719 - CCNA_02295 0.54 +0.4
2,442,795 + CCNA_02295 0.78 -0.1
2,442,800 + CCNA_02295 0.79 +1.4
2,443,582 + CCNA_02296 0.56 +1.1
2,443,715 + CCNA_02296 0.66 +0.6

Or see this region's nucleotide sequence