Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01262

Experiment: PYE with Carbenicillin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Carbenicillin 0.25 mg/ml
1,388,123	+		CCNA_01261	0.10	-1.4
1,388,133	+		CCNA_01261	0.11	-2.5
1,388,133	+		CCNA_01261	0.11	-1.4
1,388,133	+		CCNA_01261	0.11	+2.1
1,388,133	+		CCNA_01261	0.11	-1.8
1,388,141	-		CCNA_01261	0.12	-1.6
1,388,141	-		CCNA_01261	0.12	-0.3
1,388,141	-		CCNA_01261	0.12	-1.0
1,388,141	-		CCNA_01261	0.12	-0.5
1,388,141	-		CCNA_01261	0.12	-1.8
1,388,184	-		CCNA_01261	0.16	-0.1
1,388,194	+		CCNA_01261	0.17	-1.1
1,388,194	+		CCNA_01261	0.17	-1.3
1,388,202	-		CCNA_01261	0.18	-2.9
1,388,202	-		CCNA_01261	0.18	-0.0
1,388,202	-		CCNA_01261	0.18	-0.6
1,388,217	+		CCNA_01261	0.19	-0.3
1,388,234	+		CCNA_01261	0.20	-1.0
1,388,234	+		CCNA_01261	0.20	-2.8
1,388,240	-		CCNA_01261	0.21	+0.5
1,388,242	+		CCNA_01261	0.21	-0.3
1,388,249	+		CCNA_01261	0.22	-2.0
1,388,250	-		CCNA_01261	0.22	-1.8
1,388,267	+		CCNA_01261	0.23	-3.5
1,388,286	+		CCNA_01261	0.25	-1.1
1,388,286	+		CCNA_01261	0.25	-1.8
1,388,286	+		CCNA_01261	0.25	-1.2
1,388,286	+		CCNA_01261	0.25	-1.5
1,388,294	-		CCNA_01261	0.26	-0.3
1,388,294	-		CCNA_01261	0.26	-1.3
1,388,294	-		CCNA_01261	0.26	-1.3
1,388,321	-		CCNA_01261	0.28	-2.1
1,388,324	+		CCNA_01261	0.28	-0.1
1,388,344	+		CCNA_01261	0.30	-1.6
1,388,349	+		CCNA_01261	0.31	-0.6
1,388,349	+		CCNA_01261	0.31	-1.7
1,388,367	-		CCNA_01261	0.32	-1.5
1,388,396	+		CCNA_01261	0.35	+0.6
1,388,396	+		CCNA_01261	0.35	+1.5
1,388,404	-		CCNA_01261	0.36	-3.6
1,388,404	-		CCNA_01261	0.36	+0.5
1,388,404	-		CCNA_01261	0.36	-1.9
1,388,458	+				+0.9
1,388,462	+		CCNA_01261	0.41	-1.8
1,388,504	+		CCNA_01261	0.45	-2.0
1,388,514	+		CCNA_01261	0.46	-1.5
1,388,522	-		CCNA_01261	0.46	-2.6
1,388,532	-		CCNA_01261	0.47	+1.7
1,388,552	+		CCNA_01261	0.49	-2.5
1,388,557	+		CCNA_01261	0.49	-0.5
1,388,597	+		CCNA_01261	0.53	-2.1
1,388,610	-		CCNA_01261	0.54	-0.2
1,388,642	+		CCNA_01261	0.57	-0.9
1,388,694	-		CCNA_01261	0.62	-1.3
1,388,761	-		CCNA_01261	0.68	-1.6
1,388,809	+		CCNA_01261	0.72	-1.4
1,388,809	+		CCNA_01261	0.72	-0.8
1,388,832	-		CCNA_01261	0.74	+0.5
1,388,854	+		CCNA_01261	0.76	-1.4
1,388,872	+		CCNA_01261	0.78	-2.2
1,388,872	+		CCNA_01261	0.78	-0.8
1,388,880	-		CCNA_01261	0.78	-1.6
1,388,880	-		CCNA_01261	0.78	-2.7
1,388,880	-		CCNA_01261	0.78	-1.2
1,388,887	+		CCNA_01261	0.79	-3.2
1,388,888	+		CCNA_01261	0.79	-0.2
1,388,928	-		CCNA_01261	0.83	-1.5
1,388,960	+		CCNA_01261	0.85	-1.9
1,388,960	+		CCNA_01261	0.85	-1.7
1,388,960	+		CCNA_01261	0.85	-1.4
1,388,960	+		CCNA_01261	0.85	-1.4
1,388,968	-		CCNA_01261	0.86	-0.2
1,388,968	-		CCNA_01261	0.86	-0.2
1,388,968	-		CCNA_01261	0.86	+0.3
1,388,990	+		CCNA_01261	0.88	-0.3
1,388,998	-		CCNA_01261	0.89	-1.2
1,389,032	-				-0.7
1,389,114	-				-0.1
1,389,133	-				+1.2
1,389,151	+				-0.5
1,389,151	+				+1.9
1,389,198	+				-1.5
1,389,198	+				-0.2
1,389,198	-				-2.1
1,389,199	+				-1.8
1,389,207	-				-1.8
1,389,228	+				-1.6
1,389,256	+				-1.2
1,389,354	+				-1.1
1,389,406	-				+0.5
1,389,437	-		CCNA_01262	0.10	-0.1
1,389,501	-		CCNA_01262	0.12	-0.8
1,389,507	+		CCNA_01262	0.12	-3.3
1,389,515	-		CCNA_01262	0.13	+0.7
1,389,556	+		CCNA_01262	0.14	-1.3
1,389,556	+		CCNA_01262	0.14	-2.3
1,389,569	-		CCNA_01262	0.14	-0.7
1,389,631	+		CCNA_01262	0.16	-1.9
1,389,631	+		CCNA_01262	0.16	-1.5
1,389,631	+		CCNA_01262	0.16	+0.5
1,389,636	+		CCNA_01262	0.16	-2.8
1,389,639	-		CCNA_01262	0.16	-1.4
1,389,639	-		CCNA_01262	0.16	-1.4
1,389,652	+		CCNA_01262	0.17	-2.4
1,389,657	+		CCNA_01262	0.17	-1.6
1,389,657	+		CCNA_01262	0.17	-1.3
1,389,665	-		CCNA_01262	0.17	-1.4
1,389,675	-		CCNA_01262	0.18	-0.5
1,389,707	+		CCNA_01262	0.19	-2.8
1,389,715	-		CCNA_01262	0.19	-0.2
1,389,725	-		CCNA_01262	0.19	-0.2
1,389,747	+		CCNA_01262	0.20	-1.1
1,389,756	+		CCNA_01262	0.20	-0.8
1,389,756	-		CCNA_01262	0.20	+0.0
1,389,757	-		CCNA_01262	0.20	-0.8
1,389,784	+		CCNA_01262	0.21	+0.5
1,389,792	-		CCNA_01262	0.21	-0.9
1,389,797	-		CCNA_01262	0.22	-0.6
1,389,824	+		CCNA_01262	0.22	-0.8
1,389,824	+		CCNA_01262	0.22	-1.9
1,389,824	+		CCNA_01262	0.22	-0.5
1,389,826	+				+4.1
1,389,826	+		CCNA_01262	0.22	-0.1
1,389,903	+		CCNA_01262	0.25	-3.5
1,389,914	+		CCNA_01262	0.25	-1.8
1,389,960	+		CCNA_01262	0.27	-1.7
1,389,965	+		CCNA_01262	0.27	+0.5
1,389,970	+		CCNA_01262	0.27	-2.2
1,389,970	+		CCNA_01262	0.27	-1.7
1,389,978	-		CCNA_01262	0.27	-1.8
1,389,998	-		CCNA_01262	0.28	-0.8
1,390,008	+		CCNA_01262	0.28	-0.7
1,390,008	+		CCNA_01262	0.28	-1.0
1,390,008	+				+2.5
1,390,008	+		CCNA_01262	0.28	-1.3
1,390,008	+		CCNA_01262	0.28	+0.1
1,390,008	+		CCNA_01262	0.28	-1.0
1,390,008	+		CCNA_01262	0.28	-1.5
1,390,008	+		CCNA_01262	0.28	-0.7
1,390,008	+		CCNA_01262	0.28	-1.7
1,390,008	+		CCNA_01262	0.28	-0.6
1,390,016	-		CCNA_01262	0.28	-0.9
1,390,016	-		CCNA_01262	0.28	-1.2
1,390,016	-		CCNA_01262	0.28	+0.5
1,390,016	-		CCNA_01262	0.28	+1.7
1,390,036	-		CCNA_01262	0.29	-1.3
1,390,042	+		CCNA_01262	0.29	-2.5
1,390,103	-		CCNA_01262	0.31	-2.0
1,390,119	+		CCNA_01262	0.32	-1.6
1,390,120	+		CCNA_01262	0.32	-1.8
1,390,129	+		CCNA_01262	0.32	-2.3
1,390,130	+		CCNA_01262	0.32	-0.4
1,390,130	+		CCNA_01262	0.32	-0.7
1,390,148	+		CCNA_01262	0.33	-1.5
1,390,176	-		CCNA_01262	0.34	-1.4
1,390,195	+		CCNA_01262	0.34	-1.0
1,390,195	+		CCNA_01262	0.34	-0.1
1,390,195	+		CCNA_01262	0.34	-1.9
1,390,195	+		CCNA_01262	0.34	-1.7
1,390,195	+		CCNA_01262	0.34	-1.8
1,390,195	+		CCNA_01262	0.34	-1.0
1,390,195	+		CCNA_01262	0.34	-1.3
1,390,195	+		CCNA_01262	0.34	+0.3
1,390,203	-		CCNA_01262	0.34	+0.9
1,390,203	-		CCNA_01262	0.34	+1.2
1,390,203	-		CCNA_01262	0.34	-1.1
1,390,203	-		CCNA_01262	0.34	+0.2
1,390,203	-		CCNA_01262	0.34	-1.4
1,390,203	-		CCNA_01262	0.34	-1.9
1,390,203	-		CCNA_01262	0.34	+0.0
1,390,203	-		CCNA_01262	0.34	-1.7
1,390,221	+		CCNA_01262	0.35	-1.8
1,390,229	-		CCNA_01262	0.35	-1.1
1,390,239	-		CCNA_01262	0.36	-0.3
1,390,364	+		CCNA_01262	0.40	-0.6
1,390,405	+		CCNA_01262	0.41	-1.0
1,390,413	-		CCNA_01262	0.41	-0.7
1,390,413	-		CCNA_01262	0.41	+0.2
1,390,413	-		CCNA_01262	0.41	-1.2
1,390,436	+		CCNA_01262	0.42	-1.2
1,390,472	-		CCNA_01262	0.43	-1.0
1,390,507	-		CCNA_01262	0.44	-1.7
1,390,536	-		CCNA_01262	0.45	-1.5
1,390,587	+		CCNA_01262	0.47	-0.6
1,390,611	-		CCNA_01262	0.47	+0.3
1,390,613	+		CCNA_01262	0.47	-1.3
1,390,678	-		CCNA_01262	0.50	-1.1
1,390,722	-		CCNA_01262	0.51	-1.0
1,390,747	+		CCNA_01262	0.52	-1.5
1,390,764	+		CCNA_01262	0.52	-0.8
1,390,789	+		CCNA_01262	0.53	-1.7
1,390,797	-		CCNA_01262	0.53	-0.2
1,390,807	+		CCNA_01262	0.54	-1.0
1,390,834	+		CCNA_01262	0.54	-0.8
1,390,842	-		CCNA_01262	0.55	+0.0
1,390,876	+		CCNA_01262	0.56	-1.8
1,390,918	+		CCNA_01262	0.57	-0.7
1,390,926	-		CCNA_01262	0.57	+0.5
1,390,983	+		CCNA_01262	0.59	-1.6
1,390,983	+		CCNA_01262	0.59	-2.0
1,390,983	+		CCNA_01262	0.59	-1.6
1,390,983	+		CCNA_01262	0.59	-0.7
1,390,991	-		CCNA_01262	0.59	+1.6
1,390,991	-		CCNA_01262	0.59	-1.6
1,390,991	-		CCNA_01262	0.59	-1.5
1,391,006	-		CCNA_01262	0.60	+0.2
1,391,026	+		CCNA_01262	0.61	-2.4
1,391,060	-		CCNA_01262	0.62	-1.4
1,391,119	+		CCNA_01262	0.64	-3.2
1,391,159	+		CCNA_01262	0.65	-1.6
1,391,164	-		CCNA_01262	0.65	-1.6
1,391,177	+		CCNA_01262	0.65	-1.5
1,391,185	-		CCNA_01262	0.66	-0.9
1,391,193	+		CCNA_01262	0.66	-2.3
1,391,213	-		CCNA_01262	0.67	-1.8
1,391,213	-		CCNA_01262	0.67	-1.9
1,391,230	+		CCNA_01262	0.67	-2.1
1,391,230	+		CCNA_01262	0.67	-1.7
1,391,230	+		CCNA_01262	0.67	-1.9
1,391,237	+		CCNA_01262	0.67	-1.3
1,391,238	-		CCNA_01262	0.67	+0.9
1,391,261	+		CCNA_01262	0.68	-0.2
1,391,279	-		CCNA_01262	0.69	-1.1
1,391,375	-		CCNA_01262	0.72	-1.2
1,391,385	-		CCNA_01262	0.72	-1.8
1,391,408	+		CCNA_01262	0.73	-0.8
1,391,434	+		CCNA_01262	0.74	+0.2
1,391,442	-		CCNA_01262	0.74	-0.6
1,391,444	+		CCNA_01262	0.74	-1.9
1,391,452	-		CCNA_01262	0.74	-1.5
1,391,513	-		CCNA_01262	0.76	-0.0
1,391,564	-		CCNA_01262	0.78	-0.3
1,391,577	-		CCNA_01262	0.78	-2.4
1,391,590	+		CCNA_01262	0.79	-1.7
1,391,590	+		CCNA_01262	0.79	-2.2
1,391,590	+		CCNA_01262	0.79	+0.9
1,391,598	-		CCNA_01262	0.79	-0.4
1,391,598	-		CCNA_01262	0.79	-1.9
1,391,598	-		CCNA_01262	0.79	-0.0
1,391,598	-		CCNA_01262	0.79	-2.1
1,391,610	+		CCNA_01262	0.79	-0.7
1,391,626	+		CCNA_01262	0.80	-1.2
1,391,634	-		CCNA_01262	0.80	-0.4
1,391,670	+		CCNA_01262	0.81	+0.0
1,391,676	+		CCNA_01262	0.81	-1.5
1,391,678	-		CCNA_01262	0.81	-1.5
1,391,679	-		CCNA_01262	0.81	-0.9
1,391,725	-		CCNA_01262	0.83	-0.1
1,391,728	-		CCNA_01262	0.83	-1.6
1,391,765	-		CCNA_01262	0.84	-1.3
1,391,782	-		CCNA_01262	0.85	-1.3
1,391,793	+		CCNA_01262	0.85	-0.1
1,391,850	-		CCNA_01262	0.87	-1.6
1,391,945	+		CCNA_01262	0.90	-0.8
1,391,949	+		CCNA_01262	0.90	-0.9
1,391,958	-				-1.5
1,391,959	-				-2.2
1,391,959	-				-2.1
1,391,981	-				-1.8
1,392,062	+				-1.8
1,392,077	+				-1.2
1,392,163	-				-1.4
1,392,244	+				-0.6
1,392,257	-				-0.3
1,392,276	+				+1.0
1,392,407	+				-1.6
1,392,407	+				+0.2
1,392,440	-				-1.6
1,392,453	+				+0.3
1,392,461	-				-0.5
1,392,461	-				-0.3
1,392,470	+				+0.2
1,392,474	-				-1.5
1,392,476	-				-0.4
1,392,511	-				+0.1
1,392,606	+		CCNA_01263	0.14	+1.1
1,392,606	+		CCNA_01263	0.14	+1.2
1,392,606	+		CCNA_01263	0.14	+1.0
1,392,606	+		CCNA_01263	0.14	-2.0
1,392,609	-		CCNA_01263	0.14	-1.1
1,392,614	-		CCNA_01263	0.14	+0.3
1,392,614	-		CCNA_01263	0.14	-1.5
1,392,614	-		CCNA_01263	0.14	-0.1
1,392,614	-		CCNA_01263	0.14	-1.5
1,392,664	+		CCNA_01263	0.16	-1.3
1,392,664	+		CCNA_01263	0.16	+0.2
1,392,710	+		CCNA_01263	0.18	+0.4
1,392,729	+		CCNA_01263	0.19	-0.1
1,392,805	+		CCNA_01263	0.22	+0.5
1,392,805	+		CCNA_01263	0.22	-3.2
1,392,813	-		CCNA_01263	0.23	+0.2
1,392,960	+		CCNA_01263	0.29	-0.1
1,392,968	-		CCNA_01263	0.29	-2.3
1,392,979	+		CCNA_01263	0.30	-1.9
1,392,980	-		CCNA_01263	0.30	+0.8
1,392,987	-		CCNA_01263	0.30	-1.4
1,393,006	+		CCNA_01263	0.31	+0.6
1,393,011	+		CCNA_01263	0.31	+0.2
1,393,011	+		CCNA_01263	0.31	+0.1
1,393,013	-		CCNA_01263	0.31	+0.2
1,393,019	-		CCNA_01263	0.31	-0.2
1,393,030	-		CCNA_01263	0.32	+0.6
1,393,041	+		CCNA_01263	0.32	-0.2
1,393,048	+		CCNA_01263	0.33	-3.1
1,393,048	+		CCNA_01263	0.33	+0.6
1,393,049	-		CCNA_01263	0.33	-2.0
1,393,056	-		CCNA_01263	0.33	-1.7
1,393,110	+		CCNA_01263	0.35	-0.6
1,393,118	-		CCNA_01263	0.36	+0.2
1,393,152	-		CCNA_01263	0.37	-1.9
1,393,169	-		CCNA_01263	0.38	-1.3
1,393,231	-		CCNA_01263	0.40	+1.3