Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01010

Experiment: PYE with Carbenicillin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Carbenicillin 0.25 mg/ml
1,088,528	-				+2.3
1,088,528	-				+2.1
1,088,549	-				+1.3
1,088,553	+				-0.7
1,088,607	+				-0.3
1,088,616	+				-0.3
1,088,629	+				-0.2
1,088,629	+				-0.3
1,088,639	-				+1.9
1,088,639	-				+1.5
1,088,639	-				+3.6
1,088,673	-		CCNA_01009	0.10	+1.5
1,088,673	-		CCNA_01009	0.10	+1.9
1,088,685	+		CCNA_01009	0.12	+0.3
1,088,688	-		CCNA_01009	0.12	+1.1
1,088,693	-		CCNA_01009	0.13	+1.7
1,088,741	-		CCNA_01009	0.19	+1.3
1,088,742	+		CCNA_01009	0.19	+0.3
1,088,797	-		CCNA_01009	0.25	+1.6
1,088,800	+		CCNA_01009	0.26	-1.7
1,088,826	+		CCNA_01009	0.29	-0.7
1,088,826	+		CCNA_01009	0.29	-2.4
1,088,826	+		CCNA_01009	0.29	-2.1
1,088,826	+		CCNA_01009	0.29	-0.9
1,088,834	-		CCNA_01009	0.30	+1.9
1,088,834	-		CCNA_01009	0.30	+1.5
1,088,834	-		CCNA_01009	0.30	+1.5
1,088,834	-		CCNA_01009	0.30	+1.3
1,088,834	-		CCNA_01009	0.30	+1.7
1,088,834	-				+2.0
1,088,834	-		CCNA_01009	0.30	+1.5
1,088,834	-		CCNA_01009	0.30	+0.5
1,088,865	+		CCNA_01009	0.34	-1.5
1,088,873	-		CCNA_01009	0.35	+2.2
1,088,883	+		CCNA_01009	0.36	-0.4
1,088,886	-		CCNA_01009	0.36	+1.3
1,088,891	-		CCNA_01009	0.37	+1.3
1,088,891	-		CCNA_01009	0.37	+2.0
1,088,913	-		CCNA_01009	0.40	+0.8
1,088,913	-		CCNA_01009	0.40	+1.8
1,088,955	+		CCNA_01009	0.45	-0.2
1,089,012	-		CCNA_01009	0.52	+1.8
1,089,018	+		CCNA_01009	0.53	+0.5
1,089,021	-		CCNA_01009	0.53	+1.4
1,089,026	-		CCNA_01009	0.54	+2.3
1,089,028	+		CCNA_01009	0.54	-1.3
1,089,036	-		CCNA_01009	0.55	+1.0
1,089,139	+		CCNA_01009	0.67	-0.9
1,089,139	+		CCNA_01009	0.67	-0.9
1,089,149	+		CCNA_01009	0.69	+1.5
1,089,157	-		CCNA_01009	0.70	+3.4
1,089,162	-		CCNA_01009	0.70	+1.2
1,089,162	-		CCNA_01009	0.70	+1.1
1,089,197	-		CCNA_01009	0.75	+1.8
1,089,258	-		CCNA_01009	0.82	+2.2
1,089,343	+				-1.2
1,089,368	-				+1.9
1,089,385	+				-1.3
1,089,456	-				+1.8
1,089,488	-				+2.8
1,089,488	-				+2.2
1,089,493	-				+2.6
1,089,507	+				+0.8
1,089,515	-				+2.4
1,089,515	-				+2.5
1,089,524	+				-1.6
1,089,570	-				+3.0
1,089,623	+				+0.5
1,089,638	+				+0.2
1,089,639	-				+2.0
1,089,639	-				+2.0
1,089,639	-				+1.5
1,089,639	-				+2.2
1,089,644	-				+0.9
1,089,646	-				+1.0
1,089,685	+				+4.0
1,089,693	-		CCNA_01010	0.11	+3.8
1,089,717	-		CCNA_01010	0.13	+1.7
1,089,717	-		CCNA_01010	0.13	+0.9
1,089,734	+		CCNA_01010	0.14	+0.3
1,089,736	+		CCNA_01010	0.14	-1.0
1,089,736	+		CCNA_01010	0.14	-1.5
1,089,736	+		CCNA_01010	0.14	-0.7
1,089,736	+		CCNA_01010	0.14	+1.5
1,089,744	-		CCNA_01010	0.14	+1.3
1,089,744	-		CCNA_01010	0.14	+2.3
1,089,744	-		CCNA_01010	0.14	+1.9
1,089,744	-		CCNA_01010	0.14	+2.0
1,089,774	-		CCNA_01010	0.16	+1.7
1,089,802	-		CCNA_01010	0.18	+0.8
1,089,834	-		CCNA_01010	0.20	+3.4
1,089,837	+		CCNA_01010	0.20	+0.1
1,089,859	-		CCNA_01010	0.22	+1.3
1,089,891	-		CCNA_01010	0.24	+1.4
1,089,898	-		CCNA_01010	0.24	+0.6
1,089,898	-		CCNA_01010	0.24	+2.1
1,089,898	-		CCNA_01010	0.24	+1.8
1,089,898	-		CCNA_01010	0.24	+1.4
1,089,927	-		CCNA_01010	0.26	+1.1
1,089,927	-		CCNA_01010	0.26	+2.2
1,089,963	+		CCNA_01010	0.29	-0.9
1,089,973	+		CCNA_01010	0.29	+2.3
1,090,028	+		CCNA_01010	0.33	+0.5
1,090,064	-		CCNA_01010	0.35	+1.9
1,090,086	-		CCNA_01010	0.37	+1.4
1,090,088	+		CCNA_01010	0.37	+0.3
1,090,113	-		CCNA_01010	0.38	+1.3
1,090,127	+		CCNA_01010	0.39	-1.1
1,090,174	-		CCNA_01010	0.42	+1.2
1,090,179	-		CCNA_01010	0.43	+1.4
1,090,184	+		CCNA_01010	0.43	-2.2
1,090,219	-		CCNA_01010	0.45	+0.8
1,090,219	-		CCNA_01010	0.45	+1.2
1,090,237	-		CCNA_01010	0.46	+2.6
1,090,238	+		CCNA_01010	0.46	-0.2
1,090,238	+		CCNA_01010	0.46	-2.1
1,090,246	-		CCNA_01010	0.47	+1.9
1,090,268	+		CCNA_01010	0.48	-2.6
1,090,270	+		CCNA_01010	0.48	+0.4
1,090,276	-		CCNA_01010	0.49	+1.0
1,090,326	+		CCNA_01010	0.52	-1.2
1,090,326	+		CCNA_01010	0.52	+0.5
1,090,326	+		CCNA_01010	0.52	+0.6
1,090,326	+		CCNA_01010	0.52	+0.1
1,090,326	+		CCNA_01010	0.52	+0.0
1,090,334	-		CCNA_01010	0.53	+2.6
1,090,334	-		CCNA_01010	0.53	+1.3
1,090,334	-		CCNA_01010	0.53	+1.4
1,090,336	-		CCNA_01010	0.53	-0.9
1,090,336	-		CCNA_01010	0.53	+0.9
1,090,341	+		CCNA_01010	0.53	-0.9
1,090,362	-		CCNA_01010	0.54	+1.2
1,090,383	-		CCNA_01010	0.56	+1.6
1,090,388	+		CCNA_01010	0.56	+0.3
1,090,391	-		CCNA_01010	0.56	+2.4
1,090,396	-		CCNA_01010	0.57	+1.6
1,090,401	-		CCNA_01010	0.57	+1.3
1,090,416	-		CCNA_01010	0.58	+1.9
1,090,421	+		CCNA_01010	0.58	+1.1
1,090,421	+		CCNA_01010	0.58	+0.3
1,090,426	+		CCNA_01010	0.59	+1.2
1,090,429	-		CCNA_01010	0.59	+2.8
1,090,429	-		CCNA_01010	0.59	+0.6
1,090,429	-		CCNA_01010	0.59	+3.4
1,090,488	+		CCNA_01010	0.63	-0.4
1,090,496	-		CCNA_01010	0.63	+1.1
1,090,496	-		CCNA_01010	0.63	+0.8
1,090,508	-		CCNA_01010	0.64	+1.7
1,090,510	+		CCNA_01010	0.64	-0.3
1,090,510	+		CCNA_01010	0.64	-0.8
1,090,518	-		CCNA_01010	0.65	+1.0
1,090,518	-		CCNA_01010	0.65	+0.6
1,090,534	-		CCNA_01010	0.66	+2.4
1,090,646	-		CCNA_01010	0.73	+1.9
1,090,646	-		CCNA_01010	0.73	+1.4
1,090,667	+		CCNA_01010	0.74	+0.1
1,090,675	-		CCNA_01010	0.75	+1.6
1,090,675	-		CCNA_01010	0.75	+1.9
1,090,700	+		CCNA_01010	0.76	-1.3
1,090,700	-		CCNA_01010	0.76	+2.0
1,090,708	-		CCNA_01010	0.77	+1.3
1,090,723	+		CCNA_01010	0.78	+1.1
1,090,734	+		CCNA_01010	0.79	-0.2
1,090,743	+		CCNA_01010	0.79	+0.3
1,090,746	-		CCNA_01010	0.79	+1.2
1,090,755	+		CCNA_01010	0.80	-1.9
1,090,759	-		CCNA_01010	0.80	+1.5
1,090,760	+		CCNA_01010	0.80	+0.2
1,090,778	+		CCNA_01010	0.81	+0.3
1,090,786	-		CCNA_01010	0.82	+0.9
1,090,786	-		CCNA_01010	0.82	+1.3
1,090,786	-		CCNA_01010	0.82	+1.1
1,090,786	-		CCNA_01010	0.82	+1.2
1,090,817	+		CCNA_01010	0.84	-0.3
1,090,817	+		CCNA_01010	0.84	+0.7
1,090,825	-		CCNA_01010	0.84	+1.0
1,090,832	+		CCNA_01010	0.85	-1.6
1,090,832	+		CCNA_01010	0.85	+0.1
1,090,834	+		CCNA_01010	0.85	-1.5
1,090,840	-		CCNA_01010	0.85	+1.1
1,090,840	-		CCNA_01010	0.85	+1.5
1,090,842	-		CCNA_01010	0.86	+1.2
1,090,907	+		CCNA_01010	0.90	-0.6
1,090,907	+		CCNA_01010	0.90	+0.2
1,090,907	+		CCNA_01010	0.90	+0.1
1,090,909	-		CCNA_01010	0.90	+1.9
1,090,915	-				+1.9
1,090,915	-				+0.9
1,090,929	-				+1.7
1,090,958	-				+2.6
1,091,009	-				+0.9
1,091,009	-				+0.4
1,091,012	+				+0.3
1,091,037	+				-0.6
1,091,040	-				+2.5
1,091,040	-				+1.8
1,091,056	-				+2.0
1,091,059	+				-0.3
1,091,067	-				+1.9
1,091,069	-				+2.3
1,091,090	-				+1.2
1,091,090	-				+1.2
1,091,105	+				+0.7
1,091,291	-		CCNA_01011	0.20	+1.9
1,091,291	-		CCNA_01011	0.20	+1.4
1,091,490	-		CCNA_01011	0.37	+2.1
1,091,504	-		CCNA_01011	0.38	+2.9
1,091,514	-		CCNA_01011	0.39	+2.6
1,091,559	+		CCNA_01011	0.42	-0.4
1,091,561	-		CCNA_01011	0.42	+4.3
1,091,587	-		CCNA_01011	0.45	+0.8
1,091,604	-		CCNA_01011	0.46	+2.5
1,091,640	-		CCNA_01011	0.49	+2.2
1,091,679	+		CCNA_01011	0.52	+1.2
1,091,689	+		CCNA_01011	0.53	+0.7
1,091,697	-		CCNA_01011	0.54	+2.9
1,091,784	-		CCNA_01011	0.61	+2.3
1,091,825	+		CCNA_01011	0.64	+1.0
1,091,841	+		CCNA_01011	0.66	-0.4
1,091,865	+		CCNA_01011	0.68	+0.3
1,091,868	-		CCNA_01011	0.68	+2.9
1,091,886	+		CCNA_01011	0.69	-1.0
1,091,896	+		CCNA_01011	0.70	-0.4
1,091,904	-		CCNA_01011	0.71	+2.5
1,091,906	+		CCNA_01011	0.71	+0.5
1,091,911	+		CCNA_01011	0.71	-0.0
1,091,911	+		CCNA_01011	0.71	-0.2
1,091,914	-		CCNA_01011	0.72	+2.3
1,091,917	-		CCNA_01011	0.72	+1.1
1,091,919	-		CCNA_01011	0.72	+4.8
1,091,919	-		CCNA_01011	0.72	+1.9
1,091,945	+		CCNA_01011	0.74	+0.5
1,092,009	+		CCNA_01011	0.80	-0.2
1,092,059	+		CCNA_01011	0.84	-1.0
1,092,059	+		CCNA_01011	0.84	-1.2
1,092,059	+		CCNA_01011	0.84	+0.2