Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00999

Experiment: PYE with Carbenicillin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Carbenicillin 0.25 mg/ml
1,080,989	+		CCNA_00997	0.88	+1.0
1,080,989	+		CCNA_00997	0.88	-0.3
1,080,999	+		CCNA_00997	0.89	-0.2
1,081,007	-		CCNA_00997	0.89	-0.5
1,081,011	-		CCNA_00997	0.90	-0.3
1,081,012	+		CCNA_00997	0.90	-1.0
1,081,039	+				+1.0
1,081,039	+				-0.9
1,081,047	-				-0.8
1,081,047	-				-2.1
1,081,047	-				-1.0
1,081,096	-				-0.8
1,081,125	+				+2.0
1,081,133	-				-0.6
1,081,228	-				-2.1
1,081,306	+				-1.5
1,081,306	+				+0.6
1,081,306	+				+1.2
1,081,306	+				+0.1
1,081,314	-				-0.7
1,081,324	-				-0.4
1,081,409	+		CCNA_00998	0.10	+1.1
1,081,417	-		CCNA_00998	0.12	-1.2
1,081,421	+		CCNA_00998	0.13	+2.7
1,081,429	-		CCNA_00998	0.15	-1.2
1,081,457	+		CCNA_00998	0.21	+3.4
1,081,470	-		CCNA_00998	0.25	-0.3
1,081,471	+		CCNA_00998	0.25	+2.7
1,081,471	+		CCNA_00998	0.25	+2.1
1,081,481	+		CCNA_00998	0.27	+2.2
1,081,481	+		CCNA_00998	0.27	+2.9
1,081,581	+		CCNA_00998	0.51	+2.7
1,081,581	+		CCNA_00998	0.51	+2.8
1,081,581	+		CCNA_00998	0.51	+2.6
1,081,614	+		CCNA_00998	0.59	+2.5
1,081,622	-		CCNA_00998	0.61	-1.5
1,081,675	+		CCNA_00998	0.73	+3.3
1,081,675	+		CCNA_00998	0.73	+3.7
1,081,675	+		CCNA_00998	0.73	+3.4
1,081,683	-		CCNA_00998	0.75	-1.2
1,081,683	-		CCNA_00998	0.75	+0.3
1,081,683	-		CCNA_00998	0.75	-0.5
1,081,683	-		CCNA_00998	0.75	-1.0
1,081,683	-		CCNA_00998	0.75	-1.1
1,081,686	+		CCNA_00998	0.76	+3.4
1,081,702	+		CCNA_00998	0.80	+3.0
1,081,990	-				-0.2
1,082,032	+				+2.1
1,082,035	-		CCNA_00999	0.10	+0.8
1,082,132	+		CCNA_00999	0.30	+2.3
1,082,140	-		CCNA_00999	0.31	-1.7
1,082,171	+		CCNA_00999	0.38	+1.9
1,082,171	+		CCNA_00999	0.38	+1.2
1,082,202	+		CCNA_00999	0.44	+2.5
1,082,209	+		CCNA_00999	0.45	+2.3
1,082,242	+		CCNA_00999	0.52	+2.5
1,082,256	-		CCNA_00999	0.55	-1.0
1,082,292	-		CCNA_00999	0.62	-0.6
1,082,292	-		CCNA_00999	0.62	-0.9
1,082,292	-		CCNA_00999	0.62	+0.1
1,082,333	+		CCNA_00999	0.70	+2.4
1,082,341	-		CCNA_00999	0.72	+0.1
1,082,397	+		CCNA_00999	0.83	+2.8
1,082,446	+				-0.0
1,082,457	-				-0.0
1,082,484	-				+0.2
1,082,526	-				-2.3
1,082,526	-				-0.6
1,082,526	-				-2.2
1,082,547	-				+0.2
1,082,576	-		CCNA_01000	0.21	+0.3
1,082,582	-		CCNA_01000	0.24	-1.5
1,082,582	-		CCNA_01000	0.24	-0.6
1,082,582	-		CCNA_01000	0.24	-0.1
1,082,582	-		CCNA_01000	0.24	-0.3
1,082,582	-		CCNA_01000	0.24	+1.3
1,082,582	-		CCNA_01000	0.24	-1.0
1,082,582	-		CCNA_01000	0.24	+0.5
1,082,582	-		CCNA_01000	0.24	-0.3
1,082,584	-		CCNA_01000	0.25	+1.1
1,082,739	-				+0.5
1,082,739	-				+2.6
1,082,748	+				-0.4
1,082,756	-				+1.3
1,082,765	+				+2.8
1,082,765	+				+2.1
1,082,770	+				+0.1
1,082,770	+				+0.2
1,082,770	+				+1.4
1,082,770	+				+0.6
1,082,770	+				+0.7
1,082,770	+				+0.9
1,082,778	-				+0.1
1,082,793	-				+1.0
1,082,793	-				+0.4
1,082,982	-				+1.7
1,082,983	-				+1.7
1,082,983	-				+1.7
1,082,993	-				+0.1
1,083,052	-				+1.8
1,083,111	-				-0.4
1,083,132	+		CCNA_01001	0.11	-1.7
1,083,140	-		CCNA_01001	0.12	-0.2
1,083,142	+		CCNA_01001	0.12	-3.3
1,083,175	-		CCNA_01001	0.16	+0.2
1,083,213	+		CCNA_01001	0.20	-0.2
1,083,213	+		CCNA_01001	0.20	-2.1
1,083,221	-		CCNA_01001	0.21	-0.2
1,083,221	-		CCNA_01001	0.21	-0.6
1,083,246	-		CCNA_01001	0.24	-0.2
1,083,281	-		CCNA_01001	0.28	-0.8
1,083,343	+		CCNA_01001	0.34	-0.5
1,083,343	+		CCNA_01001	0.34	-1.6
1,083,348	+		CCNA_01001	0.35	-0.6
1,083,351	-		CCNA_01001	0.35	+0.9
1,083,351	-		CCNA_01001	0.35	+0.0
1,083,356	-		CCNA_01001	0.36	-0.6
1,083,446	-		CCNA_01001	0.46	+1.7