Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00833 and CCNA_03942 are separated by 136 nucleotides CCNA_03942 and CCNA_00834 are separated by 171 nucleotides CCNA_00834 and CCNA_00835 are separated by 550 nucleotides
CCNA_00833: CCNA_00833 - NAD(P)H:quinone oxidoreductase, at 898,620 to 899,219
_00833
CCNA_03942: CCNA_03942 - hypothetical protein, at 899,356 to 899,490
_03942
CCNA_00834: CCNA_00834 - flagellin FljM, at 899,662 to 900,483
_00834
CCNA_00835: CCNA_00835 - flagellin FljN, at 901,034 to 901,855
_00835
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 898.668 kb on - strand at 898.668 kb on - strand at 898.668 kb on - strand at 898.669 kb on - strand at 898.669 kb on - strand at 898.682 kb on - strand, within CCNA_00833 at 898.721 kb on + strand, within CCNA_00833 at 898.733 kb on + strand, within CCNA_00833 at 898.742 kb on - strand, within CCNA_00833 at 898.742 kb on - strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.906 kb on + strand, within CCNA_00833 at 898.941 kb on - strand, within CCNA_00833 at 898.963 kb on + strand, within CCNA_00833 at 898.971 kb on - strand, within CCNA_00833 at 898.994 kb on + strand, within CCNA_00833 at 899.061 kb on + strand, within CCNA_00833 at 899.079 kb on - strand, within CCNA_00833 at 899.139 kb on - strand, within CCNA_00833 at 899.144 kb on - strand, within CCNA_00833 at 899.213 kb on - strand at 899.216 kb on - strand at 899.262 kb on - strand at 899.361 kb on - strand at 899.361 kb on - strand at 899.376 kb on - strand, within CCNA_03942 at 899.392 kb on - strand, within CCNA_03942 at 899.420 kb on + strand, within CCNA_03942 at 899.428 kb on - strand, within CCNA_03942 at 899.629 kb on + strand at 899.639 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.673 kb on - strand at 899.673 kb on - strand at 899.673 kb on - strand at 899.675 kb on + strand at 899.678 kb on - strand at 899.683 kb on - strand at 899.737 kb on - strand at 899.752 kb on - strand, within CCNA_00834 at 899.755 kb on + strand, within CCNA_00834 at 899.978 kb on + strand, within CCNA_00834 at 899.988 kb on + strand, within CCNA_00834 at 900.007 kb on + strand, within CCNA_00834 at 900.059 kb on - strand, within CCNA_00834 at 900.065 kb on - strand, within CCNA_00834 at 900.065 kb on - strand, within CCNA_00834 at 900.089 kb on + strand, within CCNA_00834 at 900.089 kb on + strand, within CCNA_00834 at 900.127 kb on + strand, within CCNA_00834 at 900.147 kb on + strand, within CCNA_00834 at 900.148 kb on + strand, within CCNA_00834 at 900.150 kb on - strand, within CCNA_00834 at 900.155 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.236 kb on - strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.332 kb on + strand, within CCNA_00834 at 900.332 kb on + strand, within CCNA_00834 at 900.568 kb on - strand at 900.587 kb on - strand at 900.599 kb on - strand at 900.605 kb on - strand at 900.615 kb on + strand at 900.623 kb on - strand at 900.625 kb on - strand at 900.648 kb on - strand at 900.664 kb on + strand at 900.682 kb on + strand at 900.682 kb on + strand at 900.682 kb on + strand at 900.682 kb on + strand at 900.687 kb on + strand at 900.687 kb on + strand at 900.688 kb on + strand at 900.690 kb on - strand at 900.690 kb on - strand at 900.690 kb on - strand at 900.695 kb on - strand at 900.695 kb on - strand at 900.695 kb on - strand at 900.704 kb on + strand at 900.733 kb on + strand at 900.751 kb on - strand at 900.762 kb on + strand at 900.770 kb on - strand at 900.785 kb on - strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.811 kb on + strand at 900.819 kb on - strand at 900.851 kb on - strand at 900.990 kb on - strand at 901.012 kb on + strand at 901.012 kb on + strand at 901.013 kb on + strand at 901.020 kb on - strand at 901.020 kb on - strand at 901.037 kb on + strand at 901.045 kb on - strand at 901.045 kb on - strand at 901.045 kb on - strand at 901.109 kb on - strand at 901.114 kb on - strand at 901.124 kb on - strand, within CCNA_00835 at 901.124 kb on - strand, within CCNA_00835 at 901.162 kb on + strand, within CCNA_00835 at 901.162 kb on + strand, within CCNA_00835 at 901.162 kb on + strand, within CCNA_00835 at 901.360 kb on + strand, within CCNA_00835 at 901.360 kb on + strand, within CCNA_00835 at 901.405 kb on + strand, within CCNA_00835 at 901.410 kb on - strand, within CCNA_00835 at 901.424 kb on + strand, within CCNA_00835 at 901.461 kb on + strand, within CCNA_00835
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 898,668 - -1.5 898,668 - -0.9 898,668 - +0.7 898,669 - -1.3 898,669 - -0.4 898,682 - CCNA_00833 0.10 -0.1 898,721 + CCNA_00833 0.17 +0.6 898,733 + CCNA_00833 0.19 -0.9 898,742 - CCNA_00833 0.20 -2.6 898,742 - CCNA_00833 0.20 +0.6 898,772 + CCNA_00833 0.25 -1.6 898,772 + CCNA_00833 0.25 -2.2 898,772 + CCNA_00833 0.25 +1.2 898,780 - CCNA_00833 0.27 -0.7 898,780 - CCNA_00833 0.27 -1.1 898,780 - CCNA_00833 0.27 -0.4 898,780 - CCNA_00833 0.27 -0.6 898,814 - CCNA_00833 0.32 -0.5 898,814 - CCNA_00833 0.32 -0.4 898,906 + CCNA_00833 0.48 -1.8 898,941 - CCNA_00833 0.54 -0.7 898,963 + CCNA_00833 0.57 -1.5 898,971 - CCNA_00833 0.58 -1.4 898,994 + CCNA_00833 0.62 -0.8 899,061 + CCNA_00833 0.73 +0.8 899,079 - CCNA_00833 0.77 -0.8 899,139 - CCNA_00833 0.86 -0.3 899,144 - CCNA_00833 0.87 -1.8 899,213 - +0.2 899,216 - -0.1 899,262 - -0.7 899,361 - -1.0 899,361 - -2.2 899,376 - CCNA_03942 0.15 -0.5 899,392 - CCNA_03942 0.27 -2.1 899,420 + CCNA_03942 0.47 -1.8 899,428 - CCNA_03942 0.53 -0.7 899,629 + -0.1 899,639 + +2.5 899,665 + +1.0 899,665 + -0.7 899,665 + +0.3 899,665 + -0.4 899,673 - +0.6 899,673 - -0.9 899,673 - -0.4 899,675 + -0.8 899,678 - +0.1 899,683 - +0.4 899,737 - -1.5 899,752 - CCNA_00834 0.11 -0.2 899,755 + CCNA_00834 0.11 +0.5 899,978 + CCNA_00834 0.38 +0.9 899,988 + CCNA_00834 0.40 +1.5 900,007 + CCNA_00834 0.42 +2.9 900,059 - CCNA_00834 0.48 -0.4 900,065 - CCNA_00834 0.49 -1.5 900,065 - CCNA_00834 0.49 -1.0 900,089 + CCNA_00834 0.52 +1.9 900,089 + CCNA_00834 0.52 +1.1 900,127 + CCNA_00834 0.57 +2.7 900,147 + CCNA_00834 0.59 +1.8 900,148 + CCNA_00834 0.59 +2.2 900,150 - CCNA_00834 0.59 -3.0 900,155 - CCNA_00834 0.60 -0.5 900,156 - CCNA_00834 0.60 +0.3 900,156 - CCNA_00834 0.60 -2.1 900,156 - CCNA_00834 0.60 +0.3 900,236 - CCNA_00834 0.70 -0.6 900,322 + CCNA_00834 0.80 +2.4 900,322 + CCNA_00834 0.80 +2.8 900,322 + CCNA_00834 0.80 +1.9 900,322 + CCNA_00834 0.80 +2.6 900,322 + CCNA_00834 0.80 +2.2 900,322 + CCNA_00834 0.80 +2.6 900,322 + CCNA_00834 0.80 +2.4 900,322 + CCNA_00834 0.80 +3.0 900,322 + CCNA_00834 0.80 +1.8 900,332 + CCNA_00834 0.82 +2.7 900,332 + CCNA_00834 0.82 +2.2 900,568 - +1.4 900,587 - +0.8 900,599 - +2.1 900,605 - -1.0 900,615 + -0.5 900,623 - +2.5 900,625 - +0.3 900,648 - -1.0 900,664 + +3.4 900,682 + -1.7 900,682 + +0.2 900,682 + -0.2 900,682 + -0.8 900,687 + +0.4 900,687 + -1.3 900,688 + +0.0 900,690 - -0.2 900,690 - +0.2 900,690 - -0.5 900,695 - -0.5 900,695 - +0.1 900,695 - +0.1 900,704 + +0.0 900,733 + -1.5 900,751 - +0.9 900,762 + -0.6 900,770 - +1.1 900,785 - -2.1 900,790 + -1.3 900,790 + -1.2 900,790 + -2.2 900,790 + -0.9 900,790 + +0.3 900,790 + -2.6 900,790 + -1.4 900,790 + -0.5 900,790 + +0.5 900,798 - -0.3 900,798 - -0.1 900,798 - +1.3 900,798 - -0.1 900,798 - -1.0 900,798 - +0.4 900,811 + +0.8 900,819 - -0.3 900,851 - -1.3 900,990 - -0.6 901,012 + -0.2 901,012 + -0.8 901,013 + -1.7 901,020 - -0.4 901,020 - -0.6 901,037 + -0.1 901,045 - -1.0 901,045 - +0.9 901,045 - -1.2 901,109 - +0.5 901,114 - -0.5 901,124 - CCNA_00835 0.11 -1.3 901,124 - CCNA_00835 0.11 -1.9 901,162 + CCNA_00835 0.16 -0.7 901,162 + CCNA_00835 0.16 +1.0 901,162 + CCNA_00835 0.16 -1.4 901,360 + CCNA_00835 0.40 +1.6 901,360 + CCNA_00835 0.40 +1.9 901,405 + CCNA_00835 0.45 -0.2 901,410 - CCNA_00835 0.46 -0.2 901,424 + CCNA_00835 0.47 -0.1 901,461 + CCNA_00835 0.52 +0.4
Or see this region's nucleotide sequence