Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00803

Experiment: PYE with Carbenicillin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00801 and CCNA_00802 are separated by 18 nucleotidesCCNA_00802 and CCNA_00803 are separated by 158 nucleotidesCCNA_00803 and CCNA_00804 are separated by 64 nucleotidesCCNA_00804 and CCNA_00805 are separated by 229 nucleotides CCNA_00801: CCNA_00801 - cytochrome bd-type quinol oxidase, subunit 2 cydB, at 866,406 to 867,557 _00801 CCNA_00802: CCNA_00802 - cyd operon protein YbgT, at 867,576 to 867,695 _00802 CCNA_00803: CCNA_00803 - chemotaxis protein cheW, at 867,854 to 868,309 _00803 CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859 _00804 CCNA_00805: CCNA_00805 - GTP-binding protein YihA, at 869,089 to 869,778 _00805 Position (kb) 867 868 869Strain fitness (log2 ratio) -2 -1 0 1 2at 866.880 kb on + strand, within CCNA_00801at 866.909 kb on - strand, within CCNA_00801at 866.927 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.987 kb on + strand, within CCNA_00801at 866.993 kb on + strand, within CCNA_00801at 866.995 kb on - strand, within CCNA_00801at 867.039 kb on + strand, within CCNA_00801at 867.047 kb on - strand, within CCNA_00801at 867.047 kb on - strand, within CCNA_00801at 867.057 kb on - strand, within CCNA_00801at 867.081 kb on - strand, within CCNA_00801at 867.119 kb on + strand, within CCNA_00801at 867.122 kb on - strand, within CCNA_00801at 867.122 kb on - strand, within CCNA_00801at 867.228 kb on + strand, within CCNA_00801at 867.236 kb on - strand, within CCNA_00801at 867.257 kb on - strand, within CCNA_00801at 867.259 kb on + strand, within CCNA_00801at 867.259 kb on + strand, within CCNA_00801at 867.267 kb on - strand, within CCNA_00801at 867.334 kb on + strand, within CCNA_00801at 867.363 kb on + strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.399 kb on + strand, within CCNA_00801at 867.399 kb on - strand, within CCNA_00801at 867.476 kb on + strandat 867.476 kb on + strandat 867.476 kb on + strandat 867.484 kb on - strandat 867.499 kb on - strandat 867.512 kb on + strandat 867.531 kb on - strandat 867.531 kb on - strandat 867.541 kb on + strandat 867.542 kb on - strandat 867.549 kb on - strandat 867.549 kb on - strandat 867.549 kb on - strandat 867.551 kb on + strandat 867.551 kb on + strandat 867.559 kb on - strandat 867.565 kb on - strandat 867.576 kb on + strandat 867.609 kb on - strand, within CCNA_00802at 867.629 kb on + strand, within CCNA_00802at 867.637 kb on - strand, within CCNA_00802at 867.649 kb on + strand, within CCNA_00802at 867.649 kb on + strand, within CCNA_00802at 867.657 kb on - strand, within CCNA_00802at 867.678 kb on + strand, within CCNA_00802at 867.678 kb on + strand, within CCNA_00802at 867.678 kb on + strand, within CCNA_00802at 867.686 kb on - strandat 867.686 kb on - strandat 867.696 kb on + strandat 867.719 kb on - strandat 867.745 kb on + strandat 867.807 kb on - strandat 867.860 kb on + strandat 867.876 kb on - strandat 867.879 kb on + strandat 867.919 kb on - strand, within CCNA_00803at 867.924 kb on - strand, within CCNA_00803at 867.928 kb on + strand, within CCNA_00803at 867.954 kb on + strand, within CCNA_00803at 867.954 kb on + strand, within CCNA_00803at 867.984 kb on + strand, within CCNA_00803at 868.012 kb on - strand, within CCNA_00803at 868.024 kb on + strand, within CCNA_00803at 868.071 kb on - strand, within CCNA_00803at 868.076 kb on + strand, within CCNA_00803at 868.084 kb on - strand, within CCNA_00803at 868.100 kb on + strand, within CCNA_00803at 868.143 kb on - strand, within CCNA_00803at 868.163 kb on - strandat 868.176 kb on + strand, within CCNA_00803at 868.188 kb on + strand, within CCNA_00803at 868.226 kb on - strand, within CCNA_00803at 868.269 kb on + strandat 868.286 kb on + strandat 868.371 kb on + strandat 868.414 kb on - strandat 868.416 kb on + strandat 868.514 kb on - strand, within CCNA_00804at 868.566 kb on - strand, within CCNA_00804at 868.613 kb on - strand, within CCNA_00804at 868.639 kb on - strand, within CCNA_00804at 868.646 kb on - strand, within CCNA_00804at 868.653 kb on + strand, within CCNA_00804at 868.653 kb on + strand, within CCNA_00804at 868.667 kb on - strand, within CCNA_00804at 868.701 kb on - strand, within CCNA_00804at 868.708 kb on + strand, within CCNA_00804at 868.716 kb on - strand, within CCNA_00804at 868.716 kb on - strand, within CCNA_00804at 868.742 kb on + strand, within CCNA_00804at 868.742 kb on + strand, within CCNA_00804at 868.744 kb on + strand, within CCNA_00804at 868.750 kb on - strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.805 kb on - strand, within CCNA_00804at 868.836 kb on + strandat 868.847 kb on - strandat 868.900 kb on + strandat 868.917 kb on - strandat 868.987 kb on + strandat 868.990 kb on - strandat 868.992 kb on + strandat 868.995 kb on + strandat 869.004 kb on - strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.107 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
remove
866,880 + CCNA_00801 0.41 -0.6
866,909 - CCNA_00801 0.44 -0.3
866,927 + CCNA_00801 0.45 +1.8
866,970 + CCNA_00801 0.49 -1.0
866,970 + CCNA_00801 0.49 +1.1
866,970 + CCNA_00801 0.49 -0.6
866,978 - CCNA_00801 0.50 -1.9
866,978 - CCNA_00801 0.50 +0.4
866,978 - CCNA_00801 0.50 -0.5
866,987 + CCNA_00801 0.50 +1.8
866,993 + CCNA_00801 0.51 +1.1
866,995 - CCNA_00801 0.51 +0.1
867,039 + CCNA_00801 0.55 -0.3
867,047 - CCNA_00801 0.56 +0.1
867,047 - CCNA_00801 0.56 +1.8
867,057 - CCNA_00801 0.57 +0.3
867,081 - CCNA_00801 0.59 -0.0
867,119 + CCNA_00801 0.62 +0.2
867,122 - CCNA_00801 0.62 +0.7
867,122 - CCNA_00801 0.62 -1.0
867,228 + CCNA_00801 0.71 -1.7
867,236 - CCNA_00801 0.72 -0.0
867,257 - CCNA_00801 0.74 -1.2
867,259 + CCNA_00801 0.74 -0.5
867,259 + CCNA_00801 0.74 +0.1
867,267 - CCNA_00801 0.75 +1.1
867,334 + CCNA_00801 0.81 -0.2
867,363 + CCNA_00801 0.83 -1.6
867,381 - CCNA_00801 0.85 -0.6
867,381 - CCNA_00801 0.85 -1.4
867,381 - CCNA_00801 0.85 -0.9
867,399 + CCNA_00801 0.86 +0.3
867,399 - CCNA_00801 0.86 +1.8
867,476 + +0.5
867,476 + -0.7
867,476 + -2.0
867,484 - -0.4
867,499 - -0.0
867,512 + +0.7
867,531 - +1.3
867,531 - +0.3
867,541 + +1.8
867,542 - +0.3
867,549 - -0.2
867,549 - -0.7
867,549 - -0.7
867,551 + +1.2
867,551 + +1.0
867,559 - -1.5
867,565 - -0.4
867,576 + +1.9
867,609 - CCNA_00802 0.28 -1.4
867,629 + CCNA_00802 0.44 -0.0
867,637 - CCNA_00802 0.51 +0.4
867,649 + CCNA_00802 0.61 +2.1
867,649 + CCNA_00802 0.61 +2.1
867,657 - CCNA_00802 0.68 -0.3
867,678 + CCNA_00802 0.85 +1.7
867,678 + CCNA_00802 0.85 +1.3
867,678 + CCNA_00802 0.85 +2.1
867,686 - -1.1
867,686 - +0.3
867,696 + +1.0
867,719 - -0.4
867,745 + +0.3
867,807 - -1.4
867,860 + +2.2
867,876 - -0.2
867,879 + +1.3
867,919 - CCNA_00803 0.14 +0.3
867,924 - CCNA_00803 0.15 -1.7
867,928 + CCNA_00803 0.16 +1.8
867,954 + CCNA_00803 0.22 +1.7
867,954 + CCNA_00803 0.22 +2.0
867,984 + CCNA_00803 0.29 +1.9
868,012 - CCNA_00803 0.35 -1.5
868,024 + CCNA_00803 0.37 +1.9
868,071 - CCNA_00803 0.48 -0.1
868,076 + CCNA_00803 0.49 +2.0
868,084 - CCNA_00803 0.50 -0.5
868,100 + CCNA_00803 0.54 +2.6
868,143 - CCNA_00803 0.63 +1.4
868,163 - +0.1
868,176 + CCNA_00803 0.71 +2.7
868,188 + CCNA_00803 0.73 +2.3
868,226 - CCNA_00803 0.82 +0.3
868,269 + +1.9
868,286 + +2.1
868,371 + +1.0
868,414 - +0.4
868,416 + +0.0
868,514 - CCNA_00804 0.29 +0.8
868,566 - CCNA_00804 0.40 -0.0
868,613 - CCNA_00804 0.49 +1.2
868,639 - CCNA_00804 0.55 +2.1
868,646 - CCNA_00804 0.56 +0.9
868,653 + CCNA_00804 0.57 +0.5
868,653 + CCNA_00804 0.57 -0.8
868,667 - CCNA_00804 0.60 +1.4
868,701 - CCNA_00804 0.67 +1.1
868,708 + CCNA_00804 0.69 +1.1
868,716 - CCNA_00804 0.70 +1.4
868,716 - CCNA_00804 0.70 +1.5
868,742 + CCNA_00804 0.76 +0.8
868,742 + CCNA_00804 0.76 -0.4
868,744 + CCNA_00804 0.76 +0.1
868,750 - CCNA_00804 0.77 +1.3
868,797 + CCNA_00804 0.87 +0.1
868,797 + CCNA_00804 0.87 -0.4
868,797 + CCNA_00804 0.87 +1.2
868,805 - CCNA_00804 0.89 +0.8
868,836 + +0.4
868,847 - +0.7
868,900 + -0.4
868,917 - +2.0
868,987 + -1.2
868,990 - +1.2
868,992 + -1.0
868,995 + +1.0
869,004 - +0.1
869,009 + -1.5
869,009 + -0.5
869,009 + -0.6
869,009 + -0.2
869,009 + +1.5
869,009 + -1.5
869,009 + +0.4
869,017 - +2.6
869,017 - +1.2
869,017 - +0.4
869,017 - +0.7
869,107 - +2.2

Or see this region's nucleotide sequence