Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03886 and CCNA_00582 are separated by 134 nucleotides CCNA_00582 and CCNA_00583 are separated by 80 nucleotides CCNA_00583 and CCNA_00585 are separated by 118 nucleotides
CCNA_03886: CCNA_03886 - trypsin-like peptidase domain family protein, at 609,287 to 611,065
_03886
CCNA_00582: CCNA_00582 - hypothetical protein, at 611,200 to 611,757
_00582
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
CCNA_00585: CCNA_00585 - hypothetical protein, at 613,324 to 614,379
_00585
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 610.864 kb on + strand, within CCNA_03886 at 610.871 kb on - strand, within CCNA_03886 at 610.872 kb on - strand at 610.879 kb on - strand, within CCNA_03886 at 610.882 kb on + strand, within CCNA_03886 at 610.905 kb on + strand at 610.909 kb on + strand at 610.913 kb on - strand at 610.913 kb on - strand at 610.928 kb on + strand at 610.934 kb on + strand at 610.937 kb on - strand at 610.966 kb on - strand at 611.051 kb on - strand at 611.063 kb on - strand at 611.144 kb on + strand at 611.152 kb on - strand at 611.152 kb on - strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.226 kb on + strand at 611.229 kb on + strand at 611.244 kb on + strand at 611.248 kb on - strand at 611.284 kb on + strand, within CCNA_00582 at 611.284 kb on + strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.307 kb on - strand, within CCNA_00582 at 611.324 kb on - strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.333 kb on + strand, within CCNA_00582 at 611.422 kb on + strand, within CCNA_00582 at 611.440 kb on - strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.465 kb on - strand, within CCNA_00582 at 611.470 kb on + strand, within CCNA_00582 at 611.471 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.581 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.698 kb on + strand, within CCNA_00582 at 611.706 kb on - strand at 611.717 kb on - strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.798 kb on + strand at 611.806 kb on - strand at 611.812 kb on + strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.830 kb on + strand at 611.889 kb on - strand at 611.896 kb on - strand at 611.903 kb on + strand at 611.973 kb on + strand at 611.973 kb on + strand at 612.027 kb on - strand, within CCNA_00583 at 612.042 kb on - strand, within CCNA_00583 at 612.047 kb on - strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.065 kb on - strand, within CCNA_00583 at 612.078 kb on - strand, within CCNA_00583 at 612.088 kb on - strand, within CCNA_00583 at 612.090 kb on + strand, within CCNA_00583 at 612.092 kb on + strand, within CCNA_00583 at 612.098 kb on - strand, within CCNA_00583 at 612.098 kb on - strand, within CCNA_00583 at 612.113 kb on + strand, within CCNA_00583 at 612.113 kb on + strand, within CCNA_00583 at 612.134 kb on + strand, within CCNA_00583 at 612.136 kb on - strand, within CCNA_00583 at 612.147 kb on - strand, within CCNA_00583 at 612.195 kb on + strand, within CCNA_00583 at 612.203 kb on - strand, within CCNA_00583 at 612.212 kb on + strand, within CCNA_00583 at 612.222 kb on + strand, within CCNA_00583 at 612.343 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.371 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.404 kb on - strand, within CCNA_00583 at 612.411 kb on + strand, within CCNA_00583 at 612.419 kb on - strand, within CCNA_00583 at 612.420 kb on - strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.461 kb on + strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.469 kb on - strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.595 kb on + strand, within CCNA_00583 at 612.618 kb on + strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand at 612.621 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.657 kb on - strand, within CCNA_00583 at 612.677 kb on - strand, within CCNA_00583 at 612.724 kb on - strand, within CCNA_00583 at 612.756 kb on + strand, within CCNA_00583 at 612.762 kb on + strand, within CCNA_00583 at 612.829 kb on - strand, within CCNA_00583 at 612.830 kb on + strand, within CCNA_00583 at 612.841 kb on + strand, within CCNA_00583 at 612.866 kb on - strand, within CCNA_00583 at 612.888 kb on - strand, within CCNA_00583 at 613.032 kb on - strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.046 kb on - strand, within CCNA_00583 at 613.094 kb on - strand at 613.094 kb on - strand at 613.110 kb on - strand at 613.111 kb on - strand at 613.147 kb on + strand at 613.394 kb on + strand at 613.394 kb on + strand at 613.420 kb on + strand at 613.425 kb on + strand at 613.436 kb on + strand, within CCNA_00585 at 613.439 kb on - strand, within CCNA_00585 at 613.455 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.486 kb on - strand, within CCNA_00585 at 613.488 kb on + strand, within CCNA_00585 at 613.489 kb on + strand, within CCNA_00585 at 613.489 kb on + strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.512 kb on + strand, within CCNA_00585 at 613.520 kb on - strand, within CCNA_00585 at 613.521 kb on - strand, within CCNA_00585 at 613.590 kb on + strand, within CCNA_00585 at 613.601 kb on + strand, within CCNA_00585 at 613.639 kb on + strand, within CCNA_00585 at 613.639 kb on - strand, within CCNA_00585 at 613.728 kb on - strand, within CCNA_00585 at 613.737 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.880 kb on - strand, within CCNA_00585 at 613.902 kb on - strand, within CCNA_00585 at 613.926 kb on + strand, within CCNA_00585 at 613.966 kb on + strand, within CCNA_00585 at 613.971 kb on + strand, within CCNA_00585 at 613.971 kb on + strand, within CCNA_00585 at 614.029 kb on - strand, within CCNA_00585 at 614.049 kb on + strand, within CCNA_00585 at 614.051 kb on + strand, within CCNA_00585 at 614.051 kb on + strand, within CCNA_00585 at 614.054 kb on - strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.091 kb on + strand, within CCNA_00585 at 614.094 kb on - strand, within CCNA_00585 at 614.095 kb on + strand, within CCNA_00585 at 614.096 kb on + strand, within CCNA_00585 at 614.104 kb on - strand, within CCNA_00585 at 614.104 kb on - strand, within CCNA_00585 at 614.113 kb on - strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.130 kb on - strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 610,864 + CCNA_03886 0.89 +0.3 610,871 - CCNA_03886 0.89 -0.8 610,872 - +1.1 610,879 - CCNA_03886 0.89 +1.0 610,882 + CCNA_03886 0.90 +0.3 610,905 + +0.1 610,909 + -0.2 610,913 - -0.8 610,913 - -1.3 610,928 + -0.4 610,934 + +0.5 610,937 - -0.1 610,966 - +0.9 611,051 - -0.6 611,063 - +0.2 611,144 + -1.4 611,152 - -1.2 611,152 - +0.5 611,214 + +0.5 611,214 + -1.7 611,214 + -2.9 611,226 + +0.9 611,229 + -2.3 611,244 + -1.2 611,248 - -0.4 611,284 + CCNA_00582 0.15 -0.6 611,284 + CCNA_00582 0.15 +0.0 611,292 - CCNA_00582 0.16 -1.6 611,292 - CCNA_00582 0.16 -1.1 611,307 - CCNA_00582 0.19 +0.4 611,324 - CCNA_00582 0.22 -0.5 611,326 + CCNA_00582 0.23 +0.9 611,326 + CCNA_00582 0.23 -2.5 611,333 + CCNA_00582 0.24 -0.3 611,422 + CCNA_00582 0.40 +0.1 611,440 - CCNA_00582 0.43 -0.5 611,457 + CCNA_00582 0.46 -1.7 611,457 + CCNA_00582 0.46 -0.6 611,465 - CCNA_00582 0.47 +0.5 611,470 + CCNA_00582 0.48 -0.1 611,471 - CCNA_00582 0.49 -0.0 611,478 - CCNA_00582 0.50 -2.0 611,478 - CCNA_00582 0.50 -0.8 611,483 + CCNA_00582 0.51 -0.9 611,483 + CCNA_00582 0.51 +0.1 611,483 + CCNA_00582 0.51 +1.6 611,501 + CCNA_00582 0.54 -1.5 611,501 + CCNA_00582 0.54 -1.0 611,501 + CCNA_00582 0.54 +0.3 611,509 - CCNA_00582 0.55 -0.5 611,509 - CCNA_00582 0.55 -0.5 611,581 + CCNA_00582 0.68 -1.2 611,586 + CCNA_00582 0.69 +0.3 611,586 + CCNA_00582 0.69 -1.8 611,589 - CCNA_00582 0.70 -1.3 611,589 - CCNA_00582 0.70 +1.1 611,589 - CCNA_00582 0.70 -2.4 611,698 + CCNA_00582 0.89 -1.4 611,706 - -1.4 611,717 - +1.1 611,779 + -1.2 611,779 + -0.5 611,779 + -0.5 611,779 + +0.6 611,779 + -1.4 611,779 + -0.4 611,779 + -0.4 611,779 + -2.3 611,779 + -0.9 611,779 + -1.0 611,779 + -0.5 611,779 + -2.2 611,779 + +0.8 611,779 + -0.0 611,779 + -1.6 611,779 + -0.8 611,779 + -1.3 611,779 + -1.7 611,779 + -0.8 611,779 + -0.2 611,779 + +0.6 611,779 + -1.1 611,779 + +0.7 611,779 + -0.9 611,779 + -1.5 611,779 + -1.8 611,779 + -0.7 611,779 + -0.2 611,779 + -0.1 611,787 - -3.5 611,787 - -0.6 611,787 - -1.4 611,787 - +0.9 611,787 - +1.5 611,787 - -0.1 611,787 - -0.6 611,787 - +0.5 611,787 - -1.2 611,787 - +1.1 611,787 - -0.3 611,787 - -2.2 611,787 - -0.1 611,787 - -0.0 611,787 - -0.8 611,787 - -1.2 611,787 - +1.0 611,787 - -1.2 611,787 - -1.1 611,787 - -0.2 611,787 - +0.2 611,787 - -1.3 611,787 - -1.6 611,787 - -1.3 611,787 - -0.0 611,787 - -0.0 611,798 + -0.7 611,806 - -1.9 611,812 + +1.2 611,820 - -1.2 611,820 - -0.4 611,820 - -1.1 611,830 + -3.3 611,889 - -0.7 611,896 - +0.1 611,903 + -1.4 611,973 + -2.1 611,973 + -2.0 612,027 - CCNA_00583 0.14 -1.7 612,042 - CCNA_00583 0.15 +2.5 612,047 - CCNA_00583 0.15 -2.4 612,057 + CCNA_00583 0.16 -1.5 612,057 + CCNA_00583 0.16 +0.7 612,065 - CCNA_00583 0.17 -0.5 612,078 - CCNA_00583 0.18 -1.5 612,088 - CCNA_00583 0.18 -0.5 612,090 + CCNA_00583 0.18 -0.8 612,092 + CCNA_00583 0.19 +0.4 612,098 - CCNA_00583 0.19 -2.1 612,098 - CCNA_00583 0.19 -1.1 612,113 + CCNA_00583 0.20 -1.1 612,113 + CCNA_00583 0.20 +0.3 612,134 + CCNA_00583 0.22 -0.6 612,136 - CCNA_00583 0.22 -0.2 612,147 - CCNA_00583 0.23 -1.7 612,195 + CCNA_00583 0.26 -1.2 612,203 - CCNA_00583 0.27 -0.4 612,212 + CCNA_00583 0.27 -0.6 612,222 + CCNA_00583 0.28 -1.2 612,343 + CCNA_00583 0.37 +1.1 612,364 + CCNA_00583 0.38 -0.9 612,371 - CCNA_00583 0.39 -0.5 612,372 - CCNA_00583 0.39 -0.1 612,372 - CCNA_00583 0.39 -1.1 612,372 - CCNA_00583 0.39 -0.5 612,372 - CCNA_00583 0.39 -1.3 612,404 - CCNA_00583 0.41 +0.9 612,411 + CCNA_00583 0.42 +0.9 612,419 - CCNA_00583 0.42 -1.2 612,420 - CCNA_00583 0.43 -2.0 612,433 + CCNA_00583 0.43 -3.1 612,433 + CCNA_00583 0.43 -1.9 612,456 + CCNA_00583 0.45 +1.6 612,456 + CCNA_00583 0.45 -1.9 612,461 + CCNA_00583 0.46 -1.5 612,464 - CCNA_00583 0.46 -0.5 612,464 - CCNA_00583 0.46 +0.0 612,469 - CCNA_00583 0.46 +0.5 612,484 + CCNA_00583 0.47 -3.2 612,484 + CCNA_00583 0.47 -0.5 612,569 + CCNA_00583 0.53 -2.2 612,569 + CCNA_00583 0.53 -2.2 612,595 + CCNA_00583 0.55 +1.1 612,618 + CCNA_00583 0.57 -1.1 612,621 - CCNA_00583 0.57 -1.1 612,621 - CCNA_00583 0.57 -1.5 612,621 - +0.9 612,621 - CCNA_00583 0.57 -0.6 612,626 - CCNA_00583 0.58 -0.5 612,626 - CCNA_00583 0.58 -2.3 612,657 - CCNA_00583 0.60 -1.1 612,677 - CCNA_00583 0.61 -0.7 612,724 - CCNA_00583 0.65 -0.5 612,756 + CCNA_00583 0.67 +0.9 612,762 + CCNA_00583 0.68 -2.0 612,829 - CCNA_00583 0.72 -3.4 612,830 + CCNA_00583 0.73 -0.5 612,841 + CCNA_00583 0.73 -1.8 612,866 - CCNA_00583 0.75 +1.3 612,888 - CCNA_00583 0.77 -0.6 613,032 - CCNA_00583 0.87 +2.3 613,045 + CCNA_00583 0.88 -0.5 613,046 - CCNA_00583 0.88 -0.5 613,094 - +0.7 613,094 - -2.4 613,110 - +0.3 613,111 - -2.4 613,147 + -2.2 613,394 + -2.5 613,394 + -1.5 613,420 + +0.7 613,425 + -0.4 613,436 + CCNA_00585 0.11 +0.3 613,439 - CCNA_00585 0.11 -0.9 613,455 + CCNA_00585 0.12 +0.3 613,464 + CCNA_00585 0.13 -0.1 613,464 + CCNA_00585 0.13 +0.8 613,464 + CCNA_00585 0.13 +0.3 613,464 + CCNA_00585 0.13 +0.3 613,464 + CCNA_00585 0.13 -1.1 613,464 + CCNA_00585 0.13 -0.1 613,472 - CCNA_00585 0.14 -0.1 613,472 - CCNA_00585 0.14 +1.0 613,472 - CCNA_00585 0.14 -0.2 613,472 - CCNA_00585 0.14 +2.5 613,478 + CCNA_00585 0.15 +1.3 613,478 + CCNA_00585 0.15 +2.5 613,486 - CCNA_00585 0.15 +0.7 613,488 + CCNA_00585 0.16 -2.2 613,489 + CCNA_00585 0.16 -1.9 613,489 + CCNA_00585 0.16 +0.3 613,496 - CCNA_00585 0.16 +0.1 613,496 - CCNA_00585 0.16 -0.7 613,512 + CCNA_00585 0.18 -0.3 613,520 - CCNA_00585 0.19 +0.1 613,521 - CCNA_00585 0.19 -0.9 613,590 + CCNA_00585 0.25 -0.9 613,601 + CCNA_00585 0.26 +0.8 613,639 + CCNA_00585 0.30 -0.2 613,639 - CCNA_00585 0.30 +0.6 613,728 - CCNA_00585 0.38 -2.4 613,737 + CCNA_00585 0.39 -0.9 613,782 + CCNA_00585 0.43 -1.5 613,782 + CCNA_00585 0.43 -0.4 613,782 + CCNA_00585 0.43 +0.3 613,880 - CCNA_00585 0.53 -1.7 613,902 - CCNA_00585 0.55 -1.3 613,926 + CCNA_00585 0.57 -0.1 613,966 + CCNA_00585 0.61 -1.3 613,971 + CCNA_00585 0.61 +0.3 613,971 + CCNA_00585 0.61 -0.1 614,029 - CCNA_00585 0.67 -1.7 614,049 + CCNA_00585 0.69 -0.9 614,051 + CCNA_00585 0.69 -2.0 614,051 + CCNA_00585 0.69 -0.4 614,054 - CCNA_00585 0.69 -1.1 614,079 + CCNA_00585 0.71 -2.1 614,079 + CCNA_00585 0.71 -0.1 614,087 - CCNA_00585 0.72 +0.0 614,087 - CCNA_00585 0.72 -1.4 614,091 + CCNA_00585 0.73 +0.0 614,094 - CCNA_00585 0.73 +1.0 614,095 + CCNA_00585 0.73 -0.2 614,096 + CCNA_00585 0.73 +0.3 614,104 - CCNA_00585 0.74 +0.7 614,104 - CCNA_00585 0.74 -0.6 614,113 - CCNA_00585 0.75 +0.7 614,129 + CCNA_00585 0.76 -2.0 614,129 + CCNA_00585 0.76 +1.0 614,129 + CCNA_00585 0.76 +0.9 614,130 - CCNA_00585 0.76 -1.2 614,137 - CCNA_00585 0.77 -0.2 614,140 + CCNA_00585 0.77 -0.6 614,140 + CCNA_00585 0.77 +0.7 614,140 + CCNA_00585 0.77 +0.5 614,140 + CCNA_00585 0.77 -1.5 614,148 - CCNA_00585 0.78 +0.1 614,158 - CCNA_00585 0.79 +1.1 614,158 - CCNA_00585 0.79 -1.6
Or see this region's nucleotide sequence