Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00543

Experiment: PYE with Carbenicillin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00540 and CCNA_03923 are separated by 130 nucleotidesCCNA_03923 and CCNA_00541 are separated by 63 nucleotidesCCNA_00541 and CCNA_00542 overlap by 4 nucleotidesCCNA_00542 and CCNA_00543 are separated by 48 nucleotidesCCNA_00543 and CCNA_00544 are separated by 215 nucleotides CCNA_00540: CCNA_00540 - coproporphyrinogen III oxidase, at 559,904 to 560,776 _00540 CCNA_03923: CCNA_03923 - hypothetical protein, at 560,907 to 560,972 _03923 CCNA_00541: CCNA_00541 - hypothetical protein, at 561,036 to 561,344 _00541 CCNA_00542: CCNA_00542 - hypothetical protein, at 561,341 to 561,664 _00542 CCNA_00543: CCNA_00543 - methyl-accepting chemotaxis protein, at 561,713 to 562,363 _00543 CCNA_00544: CCNA_00544 - acetyl-CoA acetyltransferase, at 562,579 to 563,754 _00544 Position (kb) 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 560.771 kb on + strandat 560.771 kb on + strandat 560.779 kb on - strandat 560.784 kb on + strandat 560.784 kb on + strandat 560.792 kb on - strandat 560.845 kb on - strandat 560.851 kb on - strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.864 kb on - strandat 560.864 kb on - strandat 560.867 kb on + strandat 560.875 kb on - strandat 560.877 kb on + strandat 560.900 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.915 kb on + strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.925 kb on + strand, within CCNA_03923at 560.938 kb on - strand, within CCNA_03923at 560.952 kb on + strand, within CCNA_03923at 560.991 kb on + strandat 561.016 kb on - strandat 561.033 kb on + strandat 561.058 kb on - strandat 561.067 kb on + strand, within CCNA_00541at 561.077 kb on + strand, within CCNA_00541at 561.085 kb on - strand, within CCNA_00541at 561.135 kb on - strand, within CCNA_00541at 561.155 kb on - strand, within CCNA_00541at 561.170 kb on - strand, within CCNA_00541at 561.241 kb on + strand, within CCNA_00541at 561.253 kb on + strand, within CCNA_00541at 561.254 kb on - strand, within CCNA_00541at 561.261 kb on - strand, within CCNA_00541at 561.304 kb on - strand, within CCNA_00541at 561.304 kb on - strand, within CCNA_00541at 561.304 kb on - strand, within CCNA_00541at 561.429 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.447 kb on - strand, within CCNA_00542at 561.448 kb on - strand, within CCNA_00542at 561.472 kb on - strand, within CCNA_00542at 561.486 kb on - strand, within CCNA_00542at 561.537 kb on + strand, within CCNA_00542at 561.569 kb on + strand, within CCNA_00542at 561.594 kb on + strand, within CCNA_00542at 561.665 kb on + strandat 561.665 kb on + strandat 561.668 kb on - strandat 561.672 kb on + strandat 561.672 kb on + strandat 561.672 kb on + strandat 561.673 kb on - strandat 561.680 kb on - strandat 561.680 kb on - strandat 561.686 kb on - strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.719 kb on - strandat 561.719 kb on - strandat 561.797 kb on - strand, within CCNA_00543at 561.908 kb on + strand, within CCNA_00543at 561.925 kb on - strand, within CCNA_00543at 561.966 kb on + strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.997 kb on - strand, within CCNA_00543at 562.039 kb on + strand, within CCNA_00543at 562.129 kb on - strandat 562.153 kb on - strand, within CCNA_00543at 562.158 kb on - strand, within CCNA_00543at 562.229 kb on - strand, within CCNA_00543at 562.378 kb on - strandat 562.408 kb on - strandat 562.421 kb on + strandat 562.435 kb on + strandat 562.452 kb on - strandat 562.452 kb on - strandat 562.453 kb on - strandat 562.453 kb on - strandat 562.470 kb on - strandat 562.470 kb on - strandat 562.470 kb on - strandat 562.494 kb on - strandat 562.553 kb on + strandat 562.623 kb on - strandat 562.629 kb on + strandat 562.636 kb on + strandat 562.644 kb on - strandat 562.646 kb on + strandat 562.655 kb on + strandat 562.665 kb on + strandat 562.665 kb on + strandat 562.673 kb on - strandat 562.673 kb on - strandat 562.673 kb on - strandat 562.735 kb on - strand, within CCNA_00544at 562.752 kb on - strand, within CCNA_00544at 562.767 kb on + strand, within CCNA_00544at 562.785 kb on - strand, within CCNA_00544at 562.811 kb on + strand, within CCNA_00544at 562.828 kb on - strand, within CCNA_00544at 562.844 kb on + strand, within CCNA_00544at 562.847 kb on - strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.852 kb on - strand, within CCNA_00544at 562.857 kb on - strand, within CCNA_00544at 562.891 kb on + strand, within CCNA_00544at 562.909 kb on - strand, within CCNA_00544at 562.926 kb on - strand, within CCNA_00544at 562.947 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.957 kb on - strand, within CCNA_00544at 562.957 kb on - strand, within CCNA_00544at 563.012 kb on - strand, within CCNA_00544at 563.047 kb on + strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.056 kb on + strand, within CCNA_00544at 563.056 kb on + strand, within CCNA_00544at 563.064 kb on - strand, within CCNA_00544at 563.078 kb on + strand, within CCNA_00544at 563.095 kb on + strand, within CCNA_00544at 563.103 kb on - strand, within CCNA_00544at 563.173 kb on + strand, within CCNA_00544at 563.199 kb on + strand, within CCNA_00544at 563.208 kb on - strand, within CCNA_00544at 563.221 kb on + strand, within CCNA_00544at 563.222 kb on - strand, within CCNA_00544at 563.229 kb on - strand, within CCNA_00544at 563.257 kb on + strand, within CCNA_00544at 563.317 kb on + strand, within CCNA_00544at 563.317 kb on + strand, within CCNA_00544at 563.325 kb on - strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.354 kb on + strand, within CCNA_00544at 563.362 kb on - strand, within CCNA_00544

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
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560,771 + -0.4
560,771 + -1.7
560,779 - +0.2
560,784 + +0.0
560,784 + -0.8
560,792 - +0.7
560,845 - +1.6
560,851 - +0.4
560,856 + +1.0
560,856 + +1.0
560,856 + -0.2
560,856 + -1.2
560,856 + -0.2
560,864 - +0.2
560,864 - -1.6
560,867 + +0.8
560,875 - -0.2
560,877 + -1.8
560,900 + -1.2
560,910 + -1.4
560,910 + -1.0
560,910 + +1.3
560,910 + -1.7
560,910 + -1.0
560,910 + -0.4
560,910 + +0.0
560,910 + -0.7
560,910 + +1.0
560,910 + +0.0
560,910 + -1.1
560,910 + +2.3
560,915 + CCNA_03923 0.12 -0.5
560,918 - CCNA_03923 0.17 -0.0
560,918 - CCNA_03923 0.17 +0.2
560,918 - CCNA_03923 0.17 +1.2
560,918 - CCNA_03923 0.17 +0.2
560,918 - CCNA_03923 0.17 -1.1
560,918 - CCNA_03923 0.17 +0.0
560,925 + CCNA_03923 0.27 +0.4
560,938 - CCNA_03923 0.47 -0.8
560,952 + CCNA_03923 0.68 -0.0
560,991 + +2.1
561,016 - -2.0
561,033 + -0.7
561,058 - +1.2
561,067 + CCNA_00541 0.10 -1.5
561,077 + CCNA_00541 0.13 -2.1
561,085 - CCNA_00541 0.16 +0.0
561,135 - CCNA_00541 0.32 +1.0
561,155 - CCNA_00541 0.39 +0.1
561,170 - CCNA_00541 0.43 -1.6
561,241 + CCNA_00541 0.66 +0.9
561,253 + CCNA_00541 0.70 +0.2
561,254 - CCNA_00541 0.71 -0.3
561,261 - CCNA_00541 0.73 -0.5
561,304 - CCNA_00541 0.87 +0.6
561,304 - CCNA_00541 0.87 -1.3
561,304 - CCNA_00541 0.87 +1.3
561,429 - CCNA_00542 0.27 +2.4
561,439 - CCNA_00542 0.30 +0.1
561,439 - CCNA_00542 0.30 +1.5
561,439 - CCNA_00542 0.30 +0.2
561,439 - CCNA_00542 0.30 +0.8
561,447 - CCNA_00542 0.33 -0.0
561,448 - CCNA_00542 0.33 +0.2
561,472 - CCNA_00542 0.40 +1.4
561,486 - CCNA_00542 0.45 +0.3
561,537 + CCNA_00542 0.60 -0.6
561,569 + CCNA_00542 0.70 -1.6
561,594 + CCNA_00542 0.78 -1.8
561,665 + +0.6
561,665 + -0.7
561,668 - +1.1
561,672 + -0.1
561,672 + -1.1
561,672 + -0.3
561,673 - +1.1
561,680 - +1.0
561,680 - +0.4
561,686 - +0.5
561,711 + -0.2
561,711 + -0.9
561,711 + -0.7
561,719 - +0.1
561,719 - +1.9
561,797 - CCNA_00543 0.13 +2.3
561,908 + CCNA_00543 0.30 +0.5
561,925 - CCNA_00543 0.33 +2.4
561,966 + CCNA_00543 0.39 +1.8
561,974 - CCNA_00543 0.40 +3.3
561,974 - CCNA_00543 0.40 +1.9
561,974 - CCNA_00543 0.40 +2.2
561,974 - CCNA_00543 0.40 -0.2
561,974 - CCNA_00543 0.40 +3.5
561,974 - CCNA_00543 0.40 +3.1
561,997 - CCNA_00543 0.44 +2.9
562,039 + CCNA_00543 0.50 -0.0
562,129 - +2.4
562,153 - CCNA_00543 0.68 +3.2
562,158 - CCNA_00543 0.68 +2.1
562,229 - CCNA_00543 0.79 +3.2
562,378 - +0.8
562,408 - +1.5
562,421 + +0.8
562,435 + +0.8
562,452 - -0.6
562,452 - -1.1
562,453 - -1.2
562,453 - -0.8
562,470 - -1.2
562,470 - -0.9
562,470 - -0.3
562,494 - -0.0
562,553 + +1.0
562,623 - -1.1
562,629 + -1.1
562,636 + +0.1
562,644 - +2.8
562,646 + +0.2
562,655 + +0.4
562,665 + +0.2
562,665 + +0.2
562,673 - -1.6
562,673 - -1.8
562,673 - -0.9
562,735 - CCNA_00544 0.13 +1.2
562,752 - CCNA_00544 0.15 -0.6
562,767 + CCNA_00544 0.16 -0.6
562,785 - CCNA_00544 0.18 +0.6
562,811 + CCNA_00544 0.20 -0.1
562,828 - CCNA_00544 0.21 -0.9
562,844 + CCNA_00544 0.23 +1.3
562,847 - CCNA_00544 0.23 +0.4
562,849 + CCNA_00544 0.23 -0.8
562,849 + CCNA_00544 0.23 +0.1
562,849 + CCNA_00544 0.23 -0.4
562,849 + CCNA_00544 0.23 +1.0
562,849 + CCNA_00544 0.23 +0.9
562,849 + CCNA_00544 0.23 -0.8
562,852 - CCNA_00544 0.23 -1.1
562,857 - CCNA_00544 0.24 -0.3
562,891 + CCNA_00544 0.27 -0.1
562,909 - CCNA_00544 0.28 +0.1
562,926 - CCNA_00544 0.30 -0.4
562,947 + CCNA_00544 0.31 -1.4
562,949 + CCNA_00544 0.31 +0.1
562,949 + CCNA_00544 0.31 +1.4
562,949 + CCNA_00544 0.31 +1.1
562,957 - CCNA_00544 0.32 -0.0
562,957 - CCNA_00544 0.32 -0.9
563,012 - CCNA_00544 0.37 -0.8
563,047 + CCNA_00544 0.40 +1.1
563,055 - CCNA_00544 0.40 -1.2
563,055 - CCNA_00544 0.40 +0.1
563,055 - CCNA_00544 0.40 -0.3
563,056 + CCNA_00544 0.41 +0.2
563,056 + CCNA_00544 0.41 +0.4
563,064 - CCNA_00544 0.41 +0.4
563,078 + CCNA_00544 0.42 +0.5
563,095 + CCNA_00544 0.44 -0.4
563,103 - CCNA_00544 0.45 -2.9
563,173 + CCNA_00544 0.51 +0.2
563,199 + CCNA_00544 0.53 -1.0
563,208 - CCNA_00544 0.53 -0.5
563,221 + CCNA_00544 0.55 +0.9
563,222 - CCNA_00544 0.55 -1.2
563,229 - CCNA_00544 0.55 -0.6
563,257 + CCNA_00544 0.58 +0.6
563,317 + CCNA_00544 0.63 +0.5
563,317 + CCNA_00544 0.63 +1.9
563,325 - CCNA_00544 0.63 -0.1
563,344 + CCNA_00544 0.65 +1.8
563,344 + CCNA_00544 0.65 +0.4
563,344 + CCNA_00544 0.65 +0.3
563,354 + CCNA_00544 0.66 +1.0
563,362 - CCNA_00544 0.67 -0.3

Or see this region's nucleotide sequence