Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00362 and CCNA_00363 are separated by 36 nucleotides CCNA_00363 and CCNA_00364 are separated by 78 nucleotides CCNA_00364 and CCNA_00365 are separated by 122 nucleotides
CCNA_00362: CCNA_00362 - zinc uptake regulation protein, at 378,802 to 379,287
_00362
CCNA_00363: CCNA_00363 - PAP2 bacterial acid phosphatase, at 379,324 to 380,100
_00363
CCNA_00364: CCNA_00364 - deoxyhypusine synthase, at 380,179 to 381,273
_00364
CCNA_00365: CCNA_00365 - ornithine decarboxylase, at 381,396 to 382,655
_00365
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 379.285 kb on - strand at 379.285 kb on - strand at 379.288 kb on + strand at 379.324 kb on + strand at 379.324 kb on + strand at 379.330 kb on - strand at 379.332 kb on - strand at 379.334 kb on + strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.454 kb on - strand, within CCNA_00363 at 379.464 kb on - strand, within CCNA_00363 at 379.486 kb on + strand, within CCNA_00363 at 379.508 kb on + strand, within CCNA_00363 at 379.514 kb on - strand, within CCNA_00363 at 379.514 kb on - strand, within CCNA_00363 at 379.544 kb on + strand, within CCNA_00363 at 379.552 kb on - strand, within CCNA_00363 at 379.557 kb on - strand, within CCNA_00363 at 379.557 kb on - strand, within CCNA_00363 at 379.557 kb on - strand, within CCNA_00363 at 379.559 kb on - strand, within CCNA_00363 at 379.561 kb on + strand, within CCNA_00363 at 379.569 kb on - strand, within CCNA_00363 at 379.569 kb on - strand, within CCNA_00363 at 379.594 kb on - strand, within CCNA_00363 at 379.602 kb on + strand, within CCNA_00363 at 379.610 kb on - strand, within CCNA_00363 at 379.742 kb on - strand, within CCNA_00363 at 379.790 kb on - strand, within CCNA_00363 at 379.881 kb on + strand, within CCNA_00363 at 379.900 kb on + strand, within CCNA_00363 at 379.902 kb on + strand, within CCNA_00363 at 379.958 kb on - strand, within CCNA_00363 at 379.958 kb on - strand, within CCNA_00363 at 379.960 kb on - strand, within CCNA_00363 at 379.981 kb on - strand, within CCNA_00363 at 380.003 kb on + strand, within CCNA_00363 at 380.011 kb on - strand, within CCNA_00363 at 380.011 kb on - strand, within CCNA_00363 at 380.011 kb on - strand, within CCNA_00363 at 380.011 kb on - strand, within CCNA_00363 at 380.056 kb on + strand at 380.061 kb on + strand at 380.069 kb on - strand at 380.069 kb on - strand at 380.107 kb on - strand at 381.303 kb on - strand at 381.303 kb on - strand at 381.303 kb on - strand at 381.303 kb on - strand at 381.365 kb on - strand at 381.365 kb on - strand at 381.435 kb on - strand at 381.459 kb on - strand at 381.459 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 379,285 - +0.5 379,285 - +0.9 379,288 + -0.6 379,324 + -0.4 379,324 + +0.1 379,330 - +0.3 379,332 - -1.7 379,334 + -1.5 379,342 - +0.6 379,342 - -1.4 379,342 - -2.0 379,454 - CCNA_00363 0.17 -0.3 379,464 - CCNA_00363 0.18 -0.3 379,486 + CCNA_00363 0.21 +1.4 379,508 + CCNA_00363 0.24 -0.1 379,514 - CCNA_00363 0.24 +0.4 379,514 - CCNA_00363 0.24 +1.7 379,544 + CCNA_00363 0.28 -3.2 379,552 - CCNA_00363 0.29 +0.4 379,557 - CCNA_00363 0.30 +0.0 379,557 - CCNA_00363 0.30 +0.5 379,557 - CCNA_00363 0.30 -0.1 379,559 - CCNA_00363 0.30 +1.1 379,561 + CCNA_00363 0.31 +0.1 379,569 - CCNA_00363 0.32 -0.1 379,569 - CCNA_00363 0.32 -0.3 379,594 - CCNA_00363 0.35 +0.8 379,602 + CCNA_00363 0.36 -1.9 379,610 - CCNA_00363 0.37 -0.1 379,742 - CCNA_00363 0.54 +1.4 379,790 - CCNA_00363 0.60 +0.6 379,881 + CCNA_00363 0.72 +0.7 379,900 + CCNA_00363 0.74 -0.6 379,902 + CCNA_00363 0.74 +0.2 379,958 - CCNA_00363 0.82 -0.3 379,958 - CCNA_00363 0.82 -0.5 379,960 - CCNA_00363 0.82 -0.8 379,981 - CCNA_00363 0.85 -0.5 380,003 + CCNA_00363 0.87 +0.3 380,011 - CCNA_00363 0.88 +0.5 380,011 - CCNA_00363 0.88 -0.1 380,011 - CCNA_00363 0.88 -0.3 380,011 - CCNA_00363 0.88 -2.6 380,056 + +0.4 380,061 + -0.0 380,069 - +1.7 380,069 - +0.3 380,107 - +1.1 381,303 - +1.5 381,303 - +1.8 381,303 - +1.2 381,303 - +1.2 381,365 - +2.4 381,365 - +5.4 381,435 - +1.3 381,459 - +1.4 381,459 - +1.3
Or see this region's nucleotide sequence