Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00250

Experiment: PYE with Carbenicillin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00248 and CCNA_00249 are separated by 56 nucleotidesCCNA_00249 and CCNA_00250 are separated by 80 nucleotidesCCNA_00250 and CCNA_00251 are separated by 48 nucleotidesCCNA_00251 and CCNA_00252 are separated by 111 nucleotides CCNA_00248: CCNA_00248 - sensor histidine protein kinase, at 259,514 to 260,914 _00248 CCNA_00249: CCNA_00249 - SCO1/SenC family protein, at 260,971 to 261,561 _00249 CCNA_00250: CCNA_00250 - poly(3-hydroxyalkanoate) depolymerase, at 261,642 to 262,904 _00250 CCNA_00251: CCNA_00251 - zinc metalloprotease, at 262,953 to 263,672 _00251 CCNA_00252: CCNA_00252 - multimodular transpeptidase-transglycosylase PbpX, at 263,784 to 265,745 _00252 Position (kb) 261 262 263Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 260.654 kb on + strand, within CCNA_00248at 260.654 kb on + strand, within CCNA_00248at 260.671 kb on + strand, within CCNA_00248at 260.679 kb on - strand, within CCNA_00248at 260.679 kb on - strand, within CCNA_00248at 260.679 kb on - strand, within CCNA_00248at 260.679 kb on - strand, within CCNA_00248at 260.685 kb on + strand, within CCNA_00248at 260.686 kb on - strand, within CCNA_00248at 260.693 kb on - strand, within CCNA_00248at 260.718 kb on + strand, within CCNA_00248at 260.723 kb on + strand, within CCNA_00248at 260.723 kb on + strand, within CCNA_00248at 260.731 kb on - strand, within CCNA_00248at 260.731 kb on - strand, within CCNA_00248at 260.731 kb on - strand, within CCNA_00248at 260.743 kb on - strand, within CCNA_00248at 260.759 kb on + strandat 260.803 kb on + strandat 260.804 kb on + strandat 260.806 kb on - strandat 260.811 kb on - strandat 260.812 kb on - strandat 260.814 kb on + strandat 260.814 kb on + strandat 260.814 kb on + strandat 260.819 kb on + strandat 260.822 kb on - strandat 260.822 kb on - strandat 260.861 kb on - strandat 260.866 kb on - strandat 260.927 kb on + strandat 260.927 kb on + strandat 260.935 kb on - strandat 260.935 kb on - strandat 260.984 kb on + strandat 260.989 kb on + strandat 260.992 kb on - strandat 261.015 kb on - strandat 261.026 kb on + strandat 261.033 kb on - strand, within CCNA_00249at 261.038 kb on + strand, within CCNA_00249at 261.067 kb on - strand, within CCNA_00249at 261.142 kb on + strand, within CCNA_00249at 261.142 kb on + strand, within CCNA_00249at 261.174 kb on - strand, within CCNA_00249at 261.185 kb on + strand, within CCNA_00249at 261.187 kb on - strand, within CCNA_00249at 261.191 kb on + strand, within CCNA_00249at 261.191 kb on + strand, within CCNA_00249at 261.191 kb on + strand, within CCNA_00249at 261.191 kb on + strand, within CCNA_00249at 261.199 kb on - strand, within CCNA_00249at 261.199 kb on - strand, within CCNA_00249at 261.202 kb on + strand, within CCNA_00249at 261.202 kb on + strand, within CCNA_00249at 261.202 kb on + strand, within CCNA_00249at 261.202 kb on + strand, within CCNA_00249at 261.243 kb on + strand, within CCNA_00249at 261.251 kb on - strand, within CCNA_00249at 261.252 kb on + strand, within CCNA_00249at 261.283 kb on + strand, within CCNA_00249at 261.291 kb on - strand, within CCNA_00249at 261.301 kb on - strand, within CCNA_00249at 261.303 kb on + strand, within CCNA_00249at 261.311 kb on - strand, within CCNA_00249at 261.317 kb on - strand, within CCNA_00249at 261.317 kb on - strand, within CCNA_00249at 261.352 kb on - strand, within CCNA_00249at 261.354 kb on + strand, within CCNA_00249at 261.362 kb on + strand, within CCNA_00249at 261.372 kb on + strand, within CCNA_00249at 261.390 kb on + strand, within CCNA_00249at 261.390 kb on + strand, within CCNA_00249at 261.393 kb on + strand, within CCNA_00249at 261.398 kb on - strand, within CCNA_00249at 261.414 kb on + strand, within CCNA_00249at 261.415 kb on + strand, within CCNA_00249at 261.424 kb on + strand, within CCNA_00249at 261.429 kb on + strand, within CCNA_00249at 261.429 kb on + strand, within CCNA_00249at 261.429 kb on + strand, within CCNA_00249at 261.437 kb on + strand, within CCNA_00249at 261.437 kb on + strand, within CCNA_00249at 261.441 kb on + strand, within CCNA_00249at 261.442 kb on - strand, within CCNA_00249at 261.499 kb on + strand, within CCNA_00249at 261.500 kb on + strand, within CCNA_00249at 261.500 kb on + strand, within CCNA_00249at 261.508 kb on - strandat 261.508 kb on - strandat 261.508 kb on - strandat 261.508 kb on - strandat 261.534 kb on + strandat 261.542 kb on - strandat 261.564 kb on - strandat 261.591 kb on - strandat 261.608 kb on + strandat 261.637 kb on + strandat 261.644 kb on + strandat 261.644 kb on + strandat 261.644 kb on + strandat 261.644 kb on + strandat 261.644 kb on + strandat 261.652 kb on - strandat 261.652 kb on - strandat 261.652 kb on - strandat 261.664 kb on - strandat 261.676 kb on + strandat 261.684 kb on + strandat 261.684 kb on + strandat 261.692 kb on - strandat 261.692 kb on - strandat 261.716 kb on + strandat 261.811 kb on + strand, within CCNA_00250at 261.814 kb on - strand, within CCNA_00250at 261.839 kb on + strand, within CCNA_00250at 261.839 kb on + strand, within CCNA_00250at 261.839 kb on + strand, within CCNA_00250at 261.839 kb on + strand, within CCNA_00250at 261.839 kb on + strand, within CCNA_00250at 261.839 kb on + strand, within CCNA_00250at 261.839 kb on + strand, within CCNA_00250at 261.839 kb on + strand, within CCNA_00250at 261.839 kb on + strand, within CCNA_00250at 261.847 kb on - strand, within CCNA_00250at 261.847 kb on - strand, within CCNA_00250at 261.847 kb on - strand, within CCNA_00250at 261.847 kb on - strand, within CCNA_00250at 261.847 kb on - strand, within CCNA_00250at 261.871 kb on + strand, within CCNA_00250at 261.892 kb on + strand, within CCNA_00250at 261.892 kb on + strand, within CCNA_00250at 261.892 kb on + strand, within CCNA_00250at 261.962 kb on + strand, within CCNA_00250at 261.982 kb on - strand, within CCNA_00250at 261.999 kb on - strand, within CCNA_00250at 262.024 kb on - strand, within CCNA_00250at 262.025 kb on + strand, within CCNA_00250at 262.026 kb on + strand, within CCNA_00250at 262.026 kb on + strand, within CCNA_00250at 262.026 kb on + strand, within CCNA_00250at 262.034 kb on - strand, within CCNA_00250at 262.034 kb on - strand, within CCNA_00250at 262.045 kb on + strand, within CCNA_00250at 262.118 kb on + strand, within CCNA_00250at 262.123 kb on + strand, within CCNA_00250at 262.159 kb on + strand, within CCNA_00250at 262.164 kb on + strand, within CCNA_00250at 262.172 kb on + strand, within CCNA_00250at 262.271 kb on - strand, within CCNA_00250at 262.317 kb on - strand, within CCNA_00250at 262.412 kb on - strand, within CCNA_00250at 262.447 kb on - strand, within CCNA_00250at 262.465 kb on - strand, within CCNA_00250at 262.529 kb on + strand, within CCNA_00250at 262.537 kb on - strand, within CCNA_00250at 262.571 kb on + strand, within CCNA_00250at 262.624 kb on - strand, within CCNA_00250at 262.654 kb on + strand, within CCNA_00250at 262.654 kb on + strand, within CCNA_00250at 262.657 kb on - strand, within CCNA_00250at 262.667 kb on + strand, within CCNA_00250at 262.680 kb on - strand, within CCNA_00250at 262.685 kb on - strand, within CCNA_00250at 262.695 kb on + strand, within CCNA_00250at 262.722 kb on + strand, within CCNA_00250at 262.722 kb on + strand, within CCNA_00250at 262.722 kb on + strand, within CCNA_00250at 262.722 kb on + strand, within CCNA_00250at 262.727 kb on + strand, within CCNA_00250at 262.727 kb on + strand, within CCNA_00250at 262.730 kb on - strand, within CCNA_00250at 262.735 kb on - strand, within CCNA_00250at 262.735 kb on - strand, within CCNA_00250at 262.735 kb on - strand, within CCNA_00250at 262.769 kb on + strand, within CCNA_00250at 262.778 kb on + strandat 262.791 kb on - strandat 262.814 kb on + strandat 262.849 kb on - strandat 262.906 kb on - strandat 262.923 kb on - strandat 262.950 kb on - strandat 262.950 kb on - strandat 262.968 kb on + strandat 262.968 kb on + strandat 263.016 kb on + strandat 263.021 kb on + strandat 263.029 kb on - strand, within CCNA_00251at 263.069 kb on + strand, within CCNA_00251at 263.074 kb on + strand, within CCNA_00251at 263.095 kb on + strand, within CCNA_00251at 263.101 kb on + strand, within CCNA_00251at 263.101 kb on - strand, within CCNA_00251at 263.146 kb on - strand, within CCNA_00251at 263.204 kb on - strand, within CCNA_00251at 263.216 kb on - strand, within CCNA_00251at 263.294 kb on - strand, within CCNA_00251at 263.316 kb on - strand, within CCNA_00251at 263.333 kb on + strand, within CCNA_00251at 263.340 kb on + strand, within CCNA_00251at 263.340 kb on + strand, within CCNA_00251at 263.348 kb on - strand, within CCNA_00251at 263.373 kb on - strand, within CCNA_00251at 263.382 kb on + strand, within CCNA_00251at 263.382 kb on + strand, within CCNA_00251at 263.382 kb on + strand, within CCNA_00251at 263.383 kb on + strand, within CCNA_00251at 263.390 kb on - strand, within CCNA_00251at 263.446 kb on + strand, within CCNA_00251at 263.455 kb on - strand, within CCNA_00251at 263.530 kb on + strand, within CCNA_00251at 263.547 kb on + strand, within CCNA_00251at 263.552 kb on + strand, within CCNA_00251at 263.555 kb on - strand, within CCNA_00251at 263.576 kb on + strand, within CCNA_00251at 263.578 kb on + strand, within CCNA_00251at 263.665 kb on + strandat 263.698 kb on + strandat 263.711 kb on - strandat 263.718 kb on - strandat 263.720 kb on + strandat 263.728 kb on - strandat 263.728 kb on - strandat 263.732 kb on + strandat 263.736 kb on + strandat 263.739 kb on - strandat 263.759 kb on + strandat 263.768 kb on - strandat 263.785 kb on - strandat 263.790 kb on - strandat 263.806 kb on - strandat 263.834 kb on - strandat 263.889 kb on - strandat 263.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
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260,654 + CCNA_00248 0.81 -0.0
260,654 + CCNA_00248 0.81 -2.0
260,671 + CCNA_00248 0.83 -0.5
260,679 - CCNA_00248 0.83 -1.3
260,679 - CCNA_00248 0.83 +0.3
260,679 - CCNA_00248 0.83 -0.0
260,679 - CCNA_00248 0.83 +0.5
260,685 + CCNA_00248 0.84 -1.0
260,686 - CCNA_00248 0.84 +0.9
260,693 - CCNA_00248 0.84 -0.7
260,718 + CCNA_00248 0.86 -0.6
260,723 + CCNA_00248 0.86 -1.0
260,723 + CCNA_00248 0.86 +0.1
260,731 - CCNA_00248 0.87 -0.1
260,731 - CCNA_00248 0.87 -0.4
260,731 - CCNA_00248 0.87 +2.1
260,743 - CCNA_00248 0.88 +0.3
260,759 + +2.1
260,803 + -0.8
260,804 + -0.5
260,806 - +0.2
260,811 - -0.2
260,812 - +0.4
260,814 + -0.7
260,814 + -1.4
260,814 + -2.4
260,819 + -0.3
260,822 - -0.5
260,822 - -0.6
260,861 - +0.7
260,866 - -1.9
260,927 + +0.1
260,927 + -0.1
260,935 - -2.2
260,935 - -0.7
260,984 + -0.7
260,989 + +0.7
260,992 - -1.6
261,015 - -0.5
261,026 + -2.7
261,033 - CCNA_00249 0.10 -2.0
261,038 + CCNA_00249 0.11 -1.3
261,067 - CCNA_00249 0.16 +0.5
261,142 + CCNA_00249 0.29 +0.0
261,142 + CCNA_00249 0.29 -0.8
261,174 - CCNA_00249 0.34 -2.1
261,185 + CCNA_00249 0.36 +0.0
261,187 - CCNA_00249 0.37 +0.8
261,191 + CCNA_00249 0.37 -0.5
261,191 + CCNA_00249 0.37 -0.7
261,191 + CCNA_00249 0.37 +0.4
261,191 + CCNA_00249 0.37 -0.9
261,199 - CCNA_00249 0.39 -1.2
261,199 - CCNA_00249 0.39 -1.3
261,202 + CCNA_00249 0.39 -0.0
261,202 + CCNA_00249 0.39 -0.4
261,202 + CCNA_00249 0.39 -0.3
261,202 + CCNA_00249 0.39 +0.4
261,243 + CCNA_00249 0.46 -2.1
261,251 - CCNA_00249 0.47 -0.3
261,252 + CCNA_00249 0.48 -0.2
261,283 + CCNA_00249 0.53 -1.0
261,291 - CCNA_00249 0.54 +0.7
261,301 - CCNA_00249 0.56 -0.6
261,303 + CCNA_00249 0.56 -0.8
261,311 - CCNA_00249 0.58 -1.4
261,317 - CCNA_00249 0.59 -1.2
261,317 - CCNA_00249 0.59 -2.8
261,352 - CCNA_00249 0.64 +0.3
261,354 + CCNA_00249 0.65 +0.6
261,362 + CCNA_00249 0.66 +0.1
261,372 + CCNA_00249 0.68 +0.1
261,390 + CCNA_00249 0.71 -0.2
261,390 + CCNA_00249 0.71 -1.2
261,393 + CCNA_00249 0.71 -1.1
261,398 - CCNA_00249 0.72 -1.2
261,414 + CCNA_00249 0.75 -0.2
261,415 + CCNA_00249 0.75 +0.1
261,424 + CCNA_00249 0.77 -1.1
261,429 + CCNA_00249 0.77 -0.7
261,429 + CCNA_00249 0.77 +1.5
261,429 + CCNA_00249 0.77 +2.4
261,437 + CCNA_00249 0.79 +0.2
261,437 + CCNA_00249 0.79 -0.0
261,441 + CCNA_00249 0.80 -0.6
261,442 - CCNA_00249 0.80 -0.6
261,499 + CCNA_00249 0.89 -0.9
261,500 + CCNA_00249 0.90 +0.2
261,500 + CCNA_00249 0.90 +1.0
261,508 - +0.1
261,508 - +0.7
261,508 - -1.7
261,508 - -1.2
261,534 + -0.2
261,542 - -0.7
261,564 - +1.0
261,591 - -0.5
261,608 + +0.8
261,637 + +1.1
261,644 + +0.1
261,644 + +0.7
261,644 + -0.3
261,644 + -0.6
261,644 + +0.5
261,652 - +0.0
261,652 - -1.0
261,652 - +1.1
261,664 - +0.1
261,676 + +1.0
261,684 + +1.6
261,684 + +1.2
261,692 - -0.5
261,692 - -1.7
261,716 + -0.7
261,811 + CCNA_00250 0.13 +1.4
261,814 - CCNA_00250 0.14 -1.0
261,839 + CCNA_00250 0.16 +2.0
261,839 + CCNA_00250 0.16 +0.8
261,839 + CCNA_00250 0.16 +0.8
261,839 + CCNA_00250 0.16 +1.1
261,839 + CCNA_00250 0.16 +0.5
261,839 + CCNA_00250 0.16 -0.3
261,839 + CCNA_00250 0.16 +0.7
261,839 + CCNA_00250 0.16 +0.6
261,839 + CCNA_00250 0.16 +0.0
261,847 - CCNA_00250 0.16 +1.1
261,847 - CCNA_00250 0.16 +0.7
261,847 - CCNA_00250 0.16 -0.7
261,847 - CCNA_00250 0.16 -1.3
261,847 - CCNA_00250 0.16 +0.1
261,871 + CCNA_00250 0.18 -0.6
261,892 + CCNA_00250 0.20 -0.9
261,892 + CCNA_00250 0.20 +0.9
261,892 + CCNA_00250 0.20 +2.6
261,962 + CCNA_00250 0.25 +0.3
261,982 - CCNA_00250 0.27 -0.8
261,999 - CCNA_00250 0.28 -1.9
262,024 - CCNA_00250 0.30 +0.5
262,025 + CCNA_00250 0.30 -0.2
262,026 + CCNA_00250 0.30 -0.4
262,026 + CCNA_00250 0.30 +2.0
262,026 + CCNA_00250 0.30 -0.2
262,034 - CCNA_00250 0.31 -1.0
262,034 - CCNA_00250 0.31 -0.9
262,045 + CCNA_00250 0.32 +0.8
262,118 + CCNA_00250 0.38 +0.5
262,123 + CCNA_00250 0.38 -0.2
262,159 + CCNA_00250 0.41 +0.6
262,164 + CCNA_00250 0.41 +2.9
262,172 + CCNA_00250 0.42 +1.0
262,271 - CCNA_00250 0.50 -1.9
262,317 - CCNA_00250 0.53 +0.3
262,412 - CCNA_00250 0.61 +1.5
262,447 - CCNA_00250 0.64 -1.3
262,465 - CCNA_00250 0.65 +0.5
262,529 + CCNA_00250 0.70 +0.4
262,537 - CCNA_00250 0.71 +0.5
262,571 + CCNA_00250 0.74 -1.0
262,624 - CCNA_00250 0.78 -0.5
262,654 + CCNA_00250 0.80 +1.1
262,654 + CCNA_00250 0.80 +0.8
262,657 - CCNA_00250 0.80 -0.3
262,667 + CCNA_00250 0.81 +0.7
262,680 - CCNA_00250 0.82 +0.0
262,685 - CCNA_00250 0.83 -1.2
262,695 + CCNA_00250 0.83 +0.9
262,722 + CCNA_00250 0.86 +1.4
262,722 + CCNA_00250 0.86 +0.1
262,722 + CCNA_00250 0.86 +0.4
262,722 + CCNA_00250 0.86 -0.2
262,727 + CCNA_00250 0.86 +0.4
262,727 + CCNA_00250 0.86 -0.1
262,730 - CCNA_00250 0.86 -0.0
262,735 - CCNA_00250 0.87 -1.0
262,735 - CCNA_00250 0.87 -0.0
262,735 - CCNA_00250 0.87 -1.8
262,769 + CCNA_00250 0.89 +0.8
262,778 + +0.2
262,791 - -0.1
262,814 + +1.4
262,849 - +1.3
262,906 - -1.4
262,923 - -1.4
262,950 - +1.5
262,950 - -0.0
262,968 + +0.7
262,968 + -0.5
263,016 + -1.4
263,021 + +0.2
263,029 - CCNA_00251 0.11 -0.3
263,069 + CCNA_00251 0.16 -0.2
263,074 + CCNA_00251 0.17 -0.2
263,095 + CCNA_00251 0.20 +0.5
263,101 + CCNA_00251 0.21 -0.7
263,101 - CCNA_00251 0.21 +0.3
263,146 - CCNA_00251 0.27 -0.4
263,204 - CCNA_00251 0.35 -0.8
263,216 - CCNA_00251 0.37 -0.0
263,294 - CCNA_00251 0.47 -1.1
263,316 - CCNA_00251 0.50 -1.1
263,333 + CCNA_00251 0.53 -0.1
263,340 + CCNA_00251 0.54 -0.0
263,340 + CCNA_00251 0.54 +0.7
263,348 - CCNA_00251 0.55 -0.9
263,373 - CCNA_00251 0.58 +0.2
263,382 + CCNA_00251 0.60 +0.9
263,382 + CCNA_00251 0.60 +0.0
263,382 + CCNA_00251 0.60 -0.1
263,383 + CCNA_00251 0.60 -0.5
263,390 - CCNA_00251 0.61 -2.0
263,446 + CCNA_00251 0.68 +1.0
263,455 - CCNA_00251 0.70 -0.9
263,530 + CCNA_00251 0.80 -0.9
263,547 + CCNA_00251 0.82 +0.2
263,552 + CCNA_00251 0.83 +0.0
263,555 - CCNA_00251 0.84 -1.6
263,576 + CCNA_00251 0.87 +2.1
263,578 + CCNA_00251 0.87 -1.4
263,665 + +0.8
263,698 + +0.7
263,711 - -0.6
263,718 - +1.8
263,720 + -1.4
263,728 - +2.0
263,728 - -0.3
263,732 + -0.5
263,736 + +0.6
263,739 - +0.3
263,759 + -2.5
263,768 - -0.0
263,785 - +0.8
263,790 - +1.0
263,806 - -0.3
263,834 - -2.4
263,889 - -1.3
263,904 - -3.1

Or see this region's nucleotide sequence