Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00206

Experiment: PYE with Carbenicillin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00204 and CCNA_00205 are separated by 3 nucleotidesCCNA_00205 and CCNA_03916 overlap by 1 nucleotidesCCNA_03916 and CCNA_00206 overlap by 155 nucleotidesCCNA_00206 and CCNA_00207 overlap by 1 nucleotidesCCNA_00207 and CCNA_00208 are separated by 0 nucleotides CCNA_00204: CCNA_00204 - glutathione-regulated potassium-efflux system protein kefB, at 218,336 to 220,237 _00204 CCNA_00205: CCNA_00205 - NAD(P)H-quinone reductase, at 220,241 to 220,822 _00205 CCNA_03916: CCNA_03916 - hypothetical protein, at 220,822 to 221,085 _03916 CCNA_00206: CCNA_00206 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 220,931 to 221,641 _00206 CCNA_00207: CCNA_00207 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 221,641 to 222,282 _00207 CCNA_00208: CCNA_00208 - type 1 glutamine amidotransferase (GATase1)-like domain protein, at 222,283 to 223,272 _00208 Position (kb) 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.944 kb on - strand, within CCNA_00204at 219.946 kb on + strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.954 kb on - strand, within CCNA_00204at 219.959 kb on + strand, within CCNA_00204at 219.959 kb on - strand, within CCNA_00204at 219.961 kb on + strand, within CCNA_00204at 219.969 kb on - strand, within CCNA_00204at 220.001 kb on + strand, within CCNA_00204at 220.008 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.118 kb on + strandat 220.129 kb on - strandat 220.142 kb on + strandat 220.142 kb on + strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.155 kb on - strandat 220.155 kb on - strandat 220.155 kb on - strandat 220.161 kb on - strandat 220.203 kb on + strandat 220.203 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.270 kb on - strandat 220.291 kb on + strandat 220.304 kb on - strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.320 kb on + strand, within CCNA_00205at 220.320 kb on + strand, within CCNA_00205at 220.328 kb on - strand, within CCNA_00205at 220.339 kb on + strand, within CCNA_00205at 220.395 kb on - strand, within CCNA_00205at 220.395 kb on - strand, within CCNA_00205at 220.408 kb on - strand, within CCNA_00205at 220.416 kb on - strand, within CCNA_00205at 220.446 kb on + strand, within CCNA_00205at 220.454 kb on - strand, within CCNA_00205at 220.483 kb on + strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.523 kb on - strand, within CCNA_00205at 220.533 kb on + strand, within CCNA_00205at 220.541 kb on - strand, within CCNA_00205at 220.541 kb on - strand, within CCNA_00205at 220.546 kb on - strand, within CCNA_00205at 220.546 kb on - strand, within CCNA_00205at 220.546 kb on - strand, within CCNA_00205at 220.551 kb on - strand, within CCNA_00205at 220.553 kb on + strand, within CCNA_00205at 220.562 kb on - strand, within CCNA_00205at 220.562 kb on - strand, within CCNA_00205at 220.595 kb on + strand, within CCNA_00205at 220.595 kb on + strand, within CCNA_00205at 220.688 kb on - strand, within CCNA_00205at 220.689 kb on - strand, within CCNA_00205at 220.713 kb on + strand, within CCNA_00205at 220.713 kb on + strand, within CCNA_00205at 220.760 kb on + strand, within CCNA_00205at 220.763 kb on - strand, within CCNA_00205at 220.768 kb on - strandat 220.777 kb on + strandat 220.777 kb on + strandat 220.787 kb on + strandat 220.806 kb on + strandat 220.806 kb on + strandat 220.814 kb on - strandat 220.814 kb on - strandat 220.819 kb on + strandat 220.903 kb on - strand, within CCNA_03916at 220.927 kb on + strand, within CCNA_03916at 220.935 kb on - strandat 220.935 kb on - strandat 220.958 kb on + strandat 220.958 kb on + strandat 221.018 kb on - strandat 221.035 kb on - strandat 221.043 kb on - strandat 221.059 kb on + strandat 221.074 kb on + strandat 221.202 kb on - strand, within CCNA_00206at 221.202 kb on - strand, within CCNA_00206at 221.277 kb on + strand, within CCNA_00206at 221.300 kb on + strand, within CCNA_00206at 221.327 kb on + strand, within CCNA_00206at 221.331 kb on - strand, within CCNA_00206at 221.353 kb on + strand, within CCNA_00206at 221.387 kb on - strand, within CCNA_00206at 221.409 kb on - strand, within CCNA_00206at 221.436 kb on + strand, within CCNA_00206at 221.480 kb on + strand, within CCNA_00206at 221.558 kb on - strand, within CCNA_00206at 221.575 kb on + strandat 221.575 kb on + strandat 221.575 kb on + strandat 221.644 kb on + strandat 221.683 kb on - strandat 221.750 kb on - strand, within CCNA_00207at 221.754 kb on + strand, within CCNA_00207at 221.755 kb on - strand, within CCNA_00207at 221.841 kb on - strand, within CCNA_00207at 221.871 kb on + strandat 221.903 kb on + strand, within CCNA_00207at 221.913 kb on + strand, within CCNA_00207at 221.913 kb on + strand, within CCNA_00207at 221.966 kb on - strand, within CCNA_00207at 222.006 kb on + strand, within CCNA_00207at 222.012 kb on + strand, within CCNA_00207at 222.018 kb on + strand, within CCNA_00207at 222.021 kb on - strand, within CCNA_00207at 222.033 kb on - strand, within CCNA_00207at 222.065 kb on + strand, within CCNA_00207at 222.065 kb on + strand, within CCNA_00207at 222.070 kb on + strand, within CCNA_00207at 222.113 kb on + strand, within CCNA_00207at 222.142 kb on + strand, within CCNA_00207at 222.161 kb on + strand, within CCNA_00207at 222.207 kb on + strand, within CCNA_00207at 222.238 kb on - strandat 222.240 kb on + strandat 222.246 kb on + strandat 222.246 kb on + strandat 222.246 kb on + strandat 222.246 kb on + strandat 222.248 kb on - strandat 222.248 kb on - strandat 222.262 kb on + strandat 222.281 kb on + strandat 222.288 kb on + strandat 222.288 kb on + strandat 222.293 kb on + strandat 222.296 kb on + strandat 222.296 kb on - strandat 222.306 kb on + strandat 222.314 kb on - strandat 222.314 kb on - strandat 222.318 kb on + strandat 222.343 kb on + strandat 222.411 kb on - strand, within CCNA_00208at 222.411 kb on - strand, within CCNA_00208at 222.413 kb on + strand, within CCNA_00208at 222.483 kb on + strand, within CCNA_00208at 222.537 kb on - strand, within CCNA_00208at 222.537 kb on - strand, within CCNA_00208at 222.573 kb on + strand, within CCNA_00208at 222.641 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
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219,941 + CCNA_00204 0.84 -0.8
219,941 + CCNA_00204 0.84 -2.8
219,941 + CCNA_00204 0.84 -2.0
219,944 - CCNA_00204 0.85 +2.1
219,946 + CCNA_00204 0.85 +0.1
219,949 - CCNA_00204 0.85 +1.1
219,949 - CCNA_00204 0.85 -0.1
219,949 - CCNA_00204 0.85 +0.5
219,949 - CCNA_00204 0.85 -1.0
219,949 - CCNA_00204 0.85 +0.4
219,949 - CCNA_00204 0.85 -0.2
219,949 - CCNA_00204 0.85 -0.0
219,949 - CCNA_00204 0.85 +0.2
219,949 - CCNA_00204 0.85 +0.9
219,954 - CCNA_00204 0.85 -1.9
219,959 + CCNA_00204 0.85 -2.7
219,959 - CCNA_00204 0.85 -0.5
219,961 + CCNA_00204 0.85 -1.0
219,969 - CCNA_00204 0.86 -0.5
220,001 + CCNA_00204 0.88 +0.3
220,008 + CCNA_00204 0.88 -1.2
220,021 + CCNA_00204 0.89 +1.3
220,021 + CCNA_00204 0.89 +0.1
220,021 + CCNA_00204 0.89 -1.1
220,021 + CCNA_00204 0.89 +0.5
220,021 + CCNA_00204 0.89 -1.7
220,021 - CCNA_00204 0.89 -0.0
220,029 - CCNA_00204 0.89 -1.8
220,029 - CCNA_00204 0.89 -1.7
220,029 - CCNA_00204 0.89 -2.6
220,029 - CCNA_00204 0.89 -0.8
220,029 - CCNA_00204 0.89 +1.4
220,029 - CCNA_00204 0.89 +0.1
220,029 - CCNA_00204 0.89 -0.7
220,029 - CCNA_00204 0.89 -0.6
220,029 - CCNA_00204 0.89 -0.5
220,029 - CCNA_00204 0.89 +0.7
220,029 - CCNA_00204 0.89 -0.7
220,029 - CCNA_00204 0.89 -0.7
220,029 - CCNA_00204 0.89 -0.7
220,029 - CCNA_00204 0.89 -0.7
220,118 + +0.1
220,129 - -2.1
220,142 + +1.1
220,142 + -0.3
220,150 - -1.1
220,150 - +0.4
220,150 - -0.1
220,150 - +0.4
220,150 - +0.1
220,155 - -0.5
220,155 - +0.3
220,155 - -1.6
220,161 - -0.3
220,203 + -0.9
220,203 + +0.1
220,239 + -2.2
220,239 + -0.6
220,247 - +0.7
220,247 - -0.4
220,247 - -0.6
220,247 - -0.3
220,247 - -1.5
220,247 - +0.2
220,270 - -0.8
220,291 + -0.1
220,304 - CCNA_00205 0.11 +0.7
220,319 + CCNA_00205 0.13 +1.9
220,319 + CCNA_00205 0.13 -1.7
220,320 + CCNA_00205 0.14 -1.2
220,320 + CCNA_00205 0.14 -0.7
220,328 - CCNA_00205 0.15 -2.1
220,339 + CCNA_00205 0.17 +0.5
220,395 - CCNA_00205 0.26 +0.0
220,395 - CCNA_00205 0.26 -0.1
220,408 - CCNA_00205 0.29 +0.3
220,416 - CCNA_00205 0.30 -0.0
220,446 + CCNA_00205 0.35 -0.2
220,454 - CCNA_00205 0.37 -0.2
220,483 + CCNA_00205 0.42 +0.3
220,493 + CCNA_00205 0.43 +0.3
220,493 + CCNA_00205 0.43 -0.6
220,493 + CCNA_00205 0.43 +0.3
220,493 + CCNA_00205 0.43 -0.1
220,501 - CCNA_00205 0.45 +0.5
220,501 - CCNA_00205 0.45 +0.2
220,501 - CCNA_00205 0.45 +0.8
220,523 - CCNA_00205 0.48 -1.2
220,533 + CCNA_00205 0.50 -1.3
220,541 - CCNA_00205 0.52 -0.1
220,541 - CCNA_00205 0.52 +1.2
220,546 - CCNA_00205 0.52 -1.6
220,546 - CCNA_00205 0.52 -0.0
220,546 - CCNA_00205 0.52 +0.3
220,551 - CCNA_00205 0.53 +0.8
220,553 + CCNA_00205 0.54 -0.3
220,562 - CCNA_00205 0.55 +0.4
220,562 - CCNA_00205 0.55 +1.1
220,595 + CCNA_00205 0.61 -2.0
220,595 + CCNA_00205 0.61 -2.2
220,688 - CCNA_00205 0.77 +0.8
220,689 - CCNA_00205 0.77 -0.6
220,713 + CCNA_00205 0.81 +1.2
220,713 + CCNA_00205 0.81 -0.5
220,760 + CCNA_00205 0.89 +0.3
220,763 - CCNA_00205 0.90 -1.9
220,768 - -0.0
220,777 + -0.3
220,777 + -0.8
220,787 + +0.5
220,806 + -1.3
220,806 + -0.1
220,814 - -1.6
220,814 - -1.0
220,819 + -0.3
220,903 - CCNA_03916 0.31 +0.8
220,927 + CCNA_03916 0.40 +1.6
220,935 - +1.0
220,935 - +0.0
220,958 + +0.7
220,958 + +0.9
221,018 - +0.2
221,035 - -0.8
221,043 - -0.5
221,059 + +1.3
221,074 + +1.7
221,202 - CCNA_00206 0.38 -0.3
221,202 - CCNA_00206 0.38 -1.0
221,277 + CCNA_00206 0.49 +1.3
221,300 + CCNA_00206 0.52 +0.5
221,327 + CCNA_00206 0.56 +1.3
221,331 - CCNA_00206 0.56 -1.7
221,353 + CCNA_00206 0.59 +1.8
221,387 - CCNA_00206 0.64 -0.9
221,409 - CCNA_00206 0.67 +0.3
221,436 + CCNA_00206 0.71 +1.3
221,480 + CCNA_00206 0.77 +1.9
221,558 - CCNA_00206 0.88 +1.1
221,575 + +1.2
221,575 + +1.9
221,575 + +1.7
221,644 + +1.5
221,683 - -0.8
221,750 - CCNA_00207 0.17 -1.4
221,754 + CCNA_00207 0.18 +1.9
221,755 - CCNA_00207 0.18 -0.8
221,841 - CCNA_00207 0.31 +0.1
221,871 + +4.1
221,903 + CCNA_00207 0.41 +1.7
221,913 + CCNA_00207 0.42 +1.3
221,913 + CCNA_00207 0.42 +1.2
221,966 - CCNA_00207 0.51 -1.2
222,006 + CCNA_00207 0.57 +0.3
222,012 + CCNA_00207 0.58 +1.8
222,018 + CCNA_00207 0.59 +1.9
222,021 - CCNA_00207 0.59 +0.5
222,033 - CCNA_00207 0.61 +0.5
222,065 + CCNA_00207 0.66 +1.9
222,065 + CCNA_00207 0.66 +2.1
222,070 + CCNA_00207 0.67 +1.1
222,113 + CCNA_00207 0.74 +1.7
222,142 + CCNA_00207 0.78 +0.8
222,161 + CCNA_00207 0.81 +1.8
222,207 + CCNA_00207 0.88 +1.3
222,238 - +1.3
222,240 + +1.4
222,246 + +1.8
222,246 + +2.2
222,246 + +1.6
222,246 + +2.4
222,248 - +0.5
222,248 - -0.2
222,262 + +1.4
222,281 + +1.9
222,288 + +0.8
222,288 + +1.1
222,293 + +1.8
222,296 + +2.2
222,296 - -1.0
222,306 + +1.5
222,314 - -0.3
222,314 - +1.8
222,318 + +1.1
222,343 + +0.8
222,411 - CCNA_00208 0.13 -0.1
222,411 - CCNA_00208 0.13 -1.8
222,413 + CCNA_00208 0.13 +0.6
222,483 + CCNA_00208 0.20 -1.1
222,537 - CCNA_00208 0.26 -0.2
222,537 - CCNA_00208 0.26 -0.7
222,573 + CCNA_00208 0.29 +0.8
222,641 + +3.1

Or see this region's nucleotide sequence