Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17775 and CA265_RS17780 are separated by 182 nucleotides CA265_RS17780 and CA265_RS17785 are separated by 52 nucleotides CA265_RS17785 and CA265_RS17790 overlap by 1 nucleotides CA265_RS17790 and CA265_RS17795 are separated by 25 nucleotides
CA265_RS17775: CA265_RS17775 - hypothetical protein, at 4,448,446 to 4,449,045
_RS17775
CA265_RS17780: CA265_RS17780 - hypothetical protein, at 4,449,228 to 4,449,770
_RS17780
CA265_RS17785: CA265_RS17785 - hypothetical protein, at 4,449,823 to 4,450,518
_RS17785
CA265_RS17790: CA265_RS17790 - caa(3)-type oxidase, at 4,450,518 to 4,450,871
_RS17790
CA265_RS17795: CA265_RS17795 - cytochrome oxidase subunit III, at 4,450,897 to 4,451,610
_RS17795
Position (kb)
4449
4450
4451 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4448.828 kb on - strand, within CA265_RS17775 at 4448.837 kb on - strand, within CA265_RS17775 at 4448.945 kb on - strand, within CA265_RS17775 at 4448.953 kb on + strand, within CA265_RS17775 at 4448.954 kb on + strand, within CA265_RS17775 at 4448.955 kb on - strand, within CA265_RS17775 at 4449.015 kb on + strand at 4449.015 kb on + strand at 4449.016 kb on - strand at 4449.028 kb on + strand at 4449.046 kb on - strand at 4449.072 kb on - strand at 4449.079 kb on + strand at 4449.079 kb on + strand at 4449.082 kb on - strand at 4449.103 kb on - strand at 4449.143 kb on + strand at 4449.191 kb on - strand at 4449.232 kb on + strand at 4449.232 kb on + strand at 4449.848 kb on - strand at 4449.866 kb on - strand at 4449.922 kb on - strand, within CA265_RS17785 at 4450.159 kb on - strand, within CA265_RS17785 at 4450.203 kb on - strand, within CA265_RS17785 at 4450.203 kb on - strand, within CA265_RS17785 at 4450.243 kb on - strand, within CA265_RS17785 at 4450.243 kb on - strand, within CA265_RS17785 at 4450.332 kb on - strand, within CA265_RS17785 at 4450.414 kb on - strand, within CA265_RS17785 at 4450.414 kb on - strand, within CA265_RS17785 at 4450.468 kb on - strand at 4450.502 kb on - strand at 4450.618 kb on - strand, within CA265_RS17790 at 4450.639 kb on - strand, within CA265_RS17790 at 4450.704 kb on - strand, within CA265_RS17790 at 4450.704 kb on - strand, within CA265_RS17790 at 4450.704 kb on - strand, within CA265_RS17790 at 4450.704 kb on - strand, within CA265_RS17790 at 4450.854 kb on - strand at 4450.884 kb on - strand at 4451.126 kb on - strand at 4451.362 kb on - strand, within CA265_RS17795 at 4451.469 kb on - strand, within CA265_RS17795
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,448,828 - CA265_RS17775 0.64 -0.1 4,448,837 - CA265_RS17775 0.65 +0.1 4,448,945 - CA265_RS17775 0.83 -1.8 4,448,953 + CA265_RS17775 0.84 +1.0 4,448,954 + CA265_RS17775 0.85 +0.9 4,448,955 - CA265_RS17775 0.85 -0.7 4,449,015 + -1.1 4,449,015 + -0.7 4,449,016 - +0.2 4,449,028 + +1.1 4,449,046 - -0.5 4,449,072 - -2.5 4,449,079 + -1.6 4,449,079 + +0.8 4,449,082 - -2.3 4,449,103 - +0.9 4,449,143 + -0.2 4,449,191 - -2.8 4,449,232 + +0.2 4,449,232 + -0.5 4,449,848 - +0.1 4,449,866 - +1.1 4,449,922 - CA265_RS17785 0.14 +0.4 4,450,159 - CA265_RS17785 0.48 -1.1 4,450,203 - CA265_RS17785 0.55 -0.2 4,450,203 - CA265_RS17785 0.55 -1.6 4,450,243 - CA265_RS17785 0.60 +0.8 4,450,243 - CA265_RS17785 0.60 -0.9 4,450,332 - CA265_RS17785 0.73 -0.2 4,450,414 - CA265_RS17785 0.85 -0.2 4,450,414 - CA265_RS17785 0.85 -0.9 4,450,468 - -0.6 4,450,502 - -1.9 4,450,618 - CA265_RS17790 0.28 +0.0 4,450,639 - CA265_RS17790 0.34 -0.3 4,450,704 - CA265_RS17790 0.53 +1.8 4,450,704 - CA265_RS17790 0.53 +0.0 4,450,704 - CA265_RS17790 0.53 +1.5 4,450,704 - CA265_RS17790 0.53 +0.5 4,450,854 - -0.2 4,450,884 - +1.4 4,451,126 - -0.9 4,451,362 - CA265_RS17795 0.65 +0.6 4,451,469 - CA265_RS17795 0.80 +1.6
Or see this region's nucleotide sequence