Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3687 and Rru_A3688 overlap by 4 nucleotides Rru_A3688 and Rru_A3689 overlap by 4 nucleotides Rru_A3689 and Rru_A3690 overlap by 4 nucleotides
Rru_A3687: Rru_A3687 - Cobalt transport protein (NCBI), at 4,234,485 to 4,235,117
_A3687
Rru_A3688: Rru_A3688 - ABC transporter component (NCBI), at 4,235,114 to 4,235,815
_A3688
Rru_A3689: Rru_A3689 - MaoC-like dehydratase (NCBI), at 4,235,812 to 4,236,264
_A3689
Rru_A3690: Rru_A3690 - Glutathione synthetase (NCBI), at 4,236,261 to 4,237,217
_A3690
Position (kb) 4235
4236
4237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4234.963 kb on + strand, within Rru_A3687 at 4235.101 kb on + strand at 4235.101 kb on + strand at 4235.101 kb on + strand at 4235.101 kb on + strand at 4235.101 kb on + strand at 4235.102 kb on - strand at 4235.148 kb on + strand at 4235.148 kb on + strand at 4235.148 kb on + strand at 4235.148 kb on + strand at 4235.148 kb on + strand at 4235.149 kb on - strand at 4235.220 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.412 kb on + strand, within Rru_A3688 at 4235.413 kb on - strand, within Rru_A3688 at 4235.413 kb on - strand, within Rru_A3688 at 4235.413 kb on - strand, within Rru_A3688 at 4235.901 kb on - strand, within Rru_A3689 at 4235.901 kb on - strand, within Rru_A3689 at 4235.901 kb on - strand, within Rru_A3689 at 4235.901 kb on - strand, within Rru_A3689 at 4236.023 kb on + strand, within Rru_A3689 at 4236.023 kb on + strand, within Rru_A3689 at 4237.218 kb on - strand at 4237.260 kb on + strand at 4237.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 4,234,963 + Rru_A3687 0.76 -1.0 4,235,101 + +0.5 4,235,101 + +0.5 4,235,101 + -0.6 4,235,101 + +0.3 4,235,101 + +0.7 4,235,102 - -0.5 4,235,148 + -0.5 4,235,148 + -0.1 4,235,148 + -2.0 4,235,148 + -1.2 4,235,148 + -0.9 4,235,149 - -0.6 4,235,220 + Rru_A3688 0.15 +0.4 4,235,410 + Rru_A3688 0.42 -1.7 4,235,410 + Rru_A3688 0.42 -1.6 4,235,410 + Rru_A3688 0.42 +1.5 4,235,410 + Rru_A3688 0.42 +0.4 4,235,410 + Rru_A3688 0.42 +0.5 4,235,410 + Rru_A3688 0.42 -1.7 4,235,411 - Rru_A3688 0.42 +0.2 4,235,411 - Rru_A3688 0.42 -0.2 4,235,411 - Rru_A3688 0.42 +0.8 4,235,411 - Rru_A3688 0.42 -0.2 4,235,411 - Rru_A3688 0.42 -0.4 4,235,411 - Rru_A3688 0.42 -2.1 4,235,412 + Rru_A3688 0.42 -0.3 4,235,413 - Rru_A3688 0.43 -0.5 4,235,413 - Rru_A3688 0.43 -0.4 4,235,413 - Rru_A3688 0.43 -0.4 4,235,901 - Rru_A3689 0.20 -2.0 4,235,901 - Rru_A3689 0.20 -1.4 4,235,901 - Rru_A3689 0.20 -1.6 4,235,901 - Rru_A3689 0.20 -3.7 4,236,023 + Rru_A3689 0.47 -1.4 4,236,023 + Rru_A3689 0.47 -1.7 4,237,218 - +1.9 4,237,260 + +0.7 4,237,261 - -0.4
Or see this region's nucleotide sequence