Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3615

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3613 and Rru_A3614 overlap by 4 nucleotidesRru_A3614 and Rru_A3615 overlap by 4 nucleotidesRru_A3615 and Rru_A3616 are separated by 491 nucleotides Rru_A3613: Rru_A3613 - Quinate/Shikimate 5-dehydrogenase (NCBI), at 4,151,909 to 4,152,760 _A3613 Rru_A3614: Rru_A3614 - Maf-like protein (NCBI), at 4,152,757 to 4,153,365 _A3614 Rru_A3615: Rru_A3615 - Protein of unknown function DUF299 (NCBI), at 4,153,362 to 4,154,189 _A3615 Rru_A3616: Rru_A3616 - Uroporphyrinogen decarboxylase HemE (NCBI), at 4,154,681 to 4,155,727 _A3616 Position (kb) 4153 4154 4155Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4152.811 kb on + strandat 4152.881 kb on + strand, within Rru_A3614at 4152.881 kb on + strand, within Rru_A3614at 4152.882 kb on - strand, within Rru_A3614at 4152.882 kb on - strand, within Rru_A3614at 4152.926 kb on + strand, within Rru_A3614at 4152.926 kb on + strand, within Rru_A3614at 4152.927 kb on - strand, within Rru_A3614at 4153.095 kb on + strand, within Rru_A3614at 4153.096 kb on - strand, within Rru_A3614at 4153.096 kb on - strand, within Rru_A3614at 4153.472 kb on - strand, within Rru_A3615at 4153.707 kb on - strand, within Rru_A3615at 4153.849 kb on + strand, within Rru_A3615at 4153.850 kb on - strand, within Rru_A3615at 4153.850 kb on - strand, within Rru_A3615at 4153.850 kb on - strand, within Rru_A3615at 4153.937 kb on + strand, within Rru_A3615at 4153.937 kb on + strand, within Rru_A3615at 4153.937 kb on + strand, within Rru_A3615at 4153.938 kb on - strand, within Rru_A3615at 4153.995 kb on - strand, within Rru_A3615at 4153.995 kb on - strand, within Rru_A3615at 4154.472 kb on + strandat 4154.605 kb on + strandat 4154.605 kb on + strandat 4154.606 kb on - strandat 4154.606 kb on - strandat 4154.606 kb on - strandat 4154.607 kb on + strandat 4154.607 kb on + strandat 4154.607 kb on + strandat 4154.607 kb on + strandat 4154.607 kb on + strandat 4154.608 kb on - strandat 4154.610 kb on + strandat 4154.610 kb on + strandat 4154.610 kb on + strandat 4154.610 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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4,152,811 + -1.0
4,152,881 + Rru_A3614 0.20 -0.8
4,152,881 + Rru_A3614 0.20 -1.0
4,152,882 - Rru_A3614 0.21 -0.7
4,152,882 - Rru_A3614 0.21 +0.3
4,152,926 + Rru_A3614 0.28 -3.2
4,152,926 + Rru_A3614 0.28 +0.1
4,152,927 - Rru_A3614 0.28 +0.0
4,153,095 + Rru_A3614 0.56 -1.7
4,153,096 - Rru_A3614 0.56 +3.1
4,153,096 - Rru_A3614 0.56 +0.0
4,153,472 - Rru_A3615 0.13 +0.2
4,153,707 - Rru_A3615 0.42 -0.1
4,153,849 + Rru_A3615 0.59 +0.5
4,153,850 - Rru_A3615 0.59 -0.5
4,153,850 - Rru_A3615 0.59 -2.5
4,153,850 - Rru_A3615 0.59 -1.4
4,153,937 + Rru_A3615 0.69 -2.9
4,153,937 + Rru_A3615 0.69 +0.4
4,153,937 + Rru_A3615 0.69 -2.3
4,153,938 - Rru_A3615 0.70 +0.3
4,153,995 - Rru_A3615 0.76 +0.6
4,153,995 - Rru_A3615 0.76 -0.4
4,154,472 + +1.1
4,154,605 + +1.3
4,154,605 + -0.4
4,154,606 - -1.1
4,154,606 - -1.6
4,154,606 - -2.9
4,154,607 + +1.4
4,154,607 + +0.2
4,154,607 + +0.1
4,154,607 + -0.5
4,154,607 + -1.8
4,154,608 - -1.7
4,154,610 + -0.1
4,154,610 + -0.7
4,154,610 + +1.2
4,154,610 + -0.3

Or see this region's nucleotide sequence