Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3386

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3385 and Rru_A3386 are separated by 253 nucleotidesRru_A3386 and Rru_A3387 are separated by 34 nucleotides Rru_A3385: Rru_A3385 - OmpA/MotB (NCBI), at 3,902,293 to 3,903,021 _A3385 Rru_A3386: Rru_A3386 - BioY protein (NCBI), at 3,903,275 to 3,903,823 _A3386 Rru_A3387: Rru_A3387 - Acetyl-CoA C-acetyltransferase (NCBI), at 3,903,858 to 3,905,018 _A3387 Position (kb) 3903 3904Strain fitness (log2 ratio) -2 -1 0 1at 3902.429 kb on - strand, within Rru_A3385at 3902.429 kb on - strand, within Rru_A3385at 3902.476 kb on + strand, within Rru_A3385at 3902.477 kb on - strand, within Rru_A3385at 3903.017 kb on + strandat 3903.017 kb on + strandat 3903.017 kb on + strandat 3903.017 kb on + strandat 3903.017 kb on + strandat 3903.018 kb on - strandat 3903.018 kb on - strandat 3903.468 kb on + strand, within Rru_A3386at 3903.659 kb on + strand, within Rru_A3386at 3903.659 kb on + strand, within Rru_A3386at 3903.660 kb on - strand, within Rru_A3386at 3903.678 kb on - strand, within Rru_A3386

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,902,429 - Rru_A3385 0.19 +0.5
3,902,429 - Rru_A3385 0.19 -0.8
3,902,476 + Rru_A3385 0.25 -0.8
3,902,477 - Rru_A3385 0.25 -0.6
3,903,017 + -1.1
3,903,017 + -0.3
3,903,017 + -0.1
3,903,017 + +0.5
3,903,017 + +0.3
3,903,018 - -0.5
3,903,018 - -0.5
3,903,468 + Rru_A3386 0.35 -0.3
3,903,659 + Rru_A3386 0.70 -0.7
3,903,659 + Rru_A3386 0.70 -2.4
3,903,660 - Rru_A3386 0.70 -0.5
3,903,678 - Rru_A3386 0.73 -2.1

Or see this region's nucleotide sequence