Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3206

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3204 and Rru_A3205 are separated by 112 nucleotidesRru_A3205 and Rru_A3206 are separated by 193 nucleotidesRru_A3206 and Rru_A3207 are separated by 88 nucleotides Rru_A3204: Rru_A3204 - C-terminal processing peptidase (NCBI), at 3,695,033 to 3,696,733 _A3204 Rru_A3205: Rru_A3205 - Ribosomal protein L33 (NCBI), at 3,696,846 to 3,697,013 _A3205 Rru_A3206: Rru_A3206 - Response regulator receiver domain protein (CheY) (NCBI), at 3,697,207 to 3,697,587 _A3206 Rru_A3207: Rru_A3207 - Protein of unknown function DUF423 (NCBI), at 3,697,676 to 3,698,059 _A3207 Position (kb) 3697 3698Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3696.407 kb on + strand, within Rru_A3204at 3696.407 kb on + strand, within Rru_A3204at 3696.408 kb on - strand, within Rru_A3204at 3696.408 kb on - strand, within Rru_A3204at 3696.408 kb on - strand, within Rru_A3204at 3696.680 kb on + strandat 3696.681 kb on - strandat 3696.753 kb on + strandat 3697.012 kb on - strandat 3697.271 kb on + strand, within Rru_A3206at 3697.271 kb on + strand, within Rru_A3206at 3697.271 kb on + strand, within Rru_A3206at 3697.271 kb on + strand, within Rru_A3206at 3697.271 kb on + strand, within Rru_A3206at 3697.272 kb on - strand, within Rru_A3206at 3697.416 kb on + strand, within Rru_A3206at 3697.534 kb on - strand, within Rru_A3206at 3697.914 kb on + strand, within Rru_A3207at 3697.914 kb on + strand, within Rru_A3207at 3697.914 kb on + strand, within Rru_A3207at 3697.914 kb on + strand, within Rru_A3207at 3697.914 kb on + strand, within Rru_A3207at 3697.915 kb on - strand, within Rru_A3207at 3697.915 kb on - strand, within Rru_A3207at 3697.915 kb on - strand, within Rru_A3207at 3697.915 kb on - strand, within Rru_A3207at 3697.924 kb on - strand, within Rru_A3207at 3697.924 kb on - strand, within Rru_A3207at 3698.075 kb on + strandat 3698.076 kb on - strandat 3698.076 kb on - strandat 3698.076 kb on - strandat 3698.100 kb on - strandat 3698.191 kb on - strandat 3698.277 kb on + strandat 3698.278 kb on - strandat 3698.278 kb on - strandat 3698.278 kb on - strandat 3698.278 kb on - strandat 3698.278 kb on - strandat 3698.328 kb on + strandat 3698.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,696,407 + Rru_A3204 0.81 -0.4
3,696,407 + Rru_A3204 0.81 -0.2
3,696,408 - Rru_A3204 0.81 -0.2
3,696,408 - Rru_A3204 0.81 -0.2
3,696,408 - Rru_A3204 0.81 -0.2
3,696,680 + -1.1
3,696,681 - +0.9
3,696,753 + +0.6
3,697,012 - -0.4
3,697,271 + Rru_A3206 0.17 -1.7
3,697,271 + Rru_A3206 0.17 +0.2
3,697,271 + Rru_A3206 0.17 +2.5
3,697,271 + Rru_A3206 0.17 -0.3
3,697,271 + Rru_A3206 0.17 -2.2
3,697,272 - Rru_A3206 0.17 -1.5
3,697,416 + Rru_A3206 0.55 -3.2
3,697,534 - Rru_A3206 0.86 -2.0
3,697,914 + Rru_A3207 0.62 -3.1
3,697,914 + Rru_A3207 0.62 -3.6
3,697,914 + Rru_A3207 0.62 -0.3
3,697,914 + Rru_A3207 0.62 -0.1
3,697,914 + Rru_A3207 0.62 +0.0
3,697,915 - Rru_A3207 0.62 +0.8
3,697,915 - Rru_A3207 0.62 -1.0
3,697,915 - Rru_A3207 0.62 -0.1
3,697,915 - Rru_A3207 0.62 -0.4
3,697,924 - Rru_A3207 0.65 -0.7
3,697,924 - Rru_A3207 0.65 -1.9
3,698,075 + -0.6
3,698,076 - +0.0
3,698,076 - -0.3
3,698,076 - -2.0
3,698,100 - -2.3
3,698,191 - -1.5
3,698,277 + -1.8
3,698,278 - -1.2
3,698,278 - -0.8
3,698,278 - +0.4
3,698,278 - -2.9
3,698,278 - -3.8
3,698,328 + -0.1
3,698,329 - -0.9

Or see this region's nucleotide sequence