Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3204 and Rru_A3205 are separated by 112 nucleotides Rru_A3205 and Rru_A3206 are separated by 193 nucleotides Rru_A3206 and Rru_A3207 are separated by 88 nucleotides
Rru_A3204: Rru_A3204 - C-terminal processing peptidase (NCBI), at 3,695,033 to 3,696,733
_A3204
Rru_A3205: Rru_A3205 - Ribosomal protein L33 (NCBI), at 3,696,846 to 3,697,013
_A3205
Rru_A3206: Rru_A3206 - Response regulator receiver domain protein (CheY) (NCBI), at 3,697,207 to 3,697,587
_A3206
Rru_A3207: Rru_A3207 - Protein of unknown function DUF423 (NCBI), at 3,697,676 to 3,698,059
_A3207
Position (kb)
3697
3698 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3696.407 kb on + strand, within Rru_A3204 at 3696.407 kb on + strand, within Rru_A3204 at 3696.408 kb on - strand, within Rru_A3204 at 3696.408 kb on - strand, within Rru_A3204 at 3696.408 kb on - strand, within Rru_A3204 at 3696.680 kb on + strand at 3696.681 kb on - strand at 3696.753 kb on + strand at 3697.012 kb on - strand at 3697.271 kb on + strand, within Rru_A3206 at 3697.271 kb on + strand, within Rru_A3206 at 3697.271 kb on + strand, within Rru_A3206 at 3697.271 kb on + strand, within Rru_A3206 at 3697.271 kb on + strand, within Rru_A3206 at 3697.272 kb on - strand, within Rru_A3206 at 3697.416 kb on + strand, within Rru_A3206 at 3697.534 kb on - strand, within Rru_A3206 at 3697.914 kb on + strand, within Rru_A3207 at 3697.914 kb on + strand, within Rru_A3207 at 3697.914 kb on + strand, within Rru_A3207 at 3697.914 kb on + strand, within Rru_A3207 at 3697.914 kb on + strand, within Rru_A3207 at 3697.915 kb on - strand, within Rru_A3207 at 3697.915 kb on - strand, within Rru_A3207 at 3697.915 kb on - strand, within Rru_A3207 at 3697.915 kb on - strand, within Rru_A3207 at 3697.924 kb on - strand, within Rru_A3207 at 3697.924 kb on - strand, within Rru_A3207 at 3698.075 kb on + strand at 3698.076 kb on - strand at 3698.076 kb on - strand at 3698.076 kb on - strand at 3698.100 kb on - strand at 3698.191 kb on - strand at 3698.277 kb on + strand at 3698.278 kb on - strand at 3698.278 kb on - strand at 3698.278 kb on - strand at 3698.278 kb on - strand at 3698.278 kb on - strand at 3698.328 kb on + strand at 3698.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 3,696,407 + Rru_A3204 0.81 -0.4 3,696,407 + Rru_A3204 0.81 -0.2 3,696,408 - Rru_A3204 0.81 -0.2 3,696,408 - Rru_A3204 0.81 -0.2 3,696,408 - Rru_A3204 0.81 -0.2 3,696,680 + -1.1 3,696,681 - +0.9 3,696,753 + +0.6 3,697,012 - -0.4 3,697,271 + Rru_A3206 0.17 -1.7 3,697,271 + Rru_A3206 0.17 +0.2 3,697,271 + Rru_A3206 0.17 +2.5 3,697,271 + Rru_A3206 0.17 -0.3 3,697,271 + Rru_A3206 0.17 -2.2 3,697,272 - Rru_A3206 0.17 -1.5 3,697,416 + Rru_A3206 0.55 -3.2 3,697,534 - Rru_A3206 0.86 -2.0 3,697,914 + Rru_A3207 0.62 -3.1 3,697,914 + Rru_A3207 0.62 -3.6 3,697,914 + Rru_A3207 0.62 -0.3 3,697,914 + Rru_A3207 0.62 -0.1 3,697,914 + Rru_A3207 0.62 +0.0 3,697,915 - Rru_A3207 0.62 +0.8 3,697,915 - Rru_A3207 0.62 -1.0 3,697,915 - Rru_A3207 0.62 -0.1 3,697,915 - Rru_A3207 0.62 -0.4 3,697,924 - Rru_A3207 0.65 -0.7 3,697,924 - Rru_A3207 0.65 -1.9 3,698,075 + -0.6 3,698,076 - +0.0 3,698,076 - -0.3 3,698,076 - -2.0 3,698,100 - -2.3 3,698,191 - -1.5 3,698,277 + -1.8 3,698,278 - -1.2 3,698,278 - -0.8 3,698,278 - +0.4 3,698,278 - -2.9 3,698,278 - -3.8 3,698,328 + -0.1 3,698,329 - -0.9
Or see this region's nucleotide sequence