Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2817

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2815 and Rru_A2816 are separated by 136 nucleotidesRru_A2816 and Rru_A2817 are separated by 151 nucleotidesRru_A2817 and Rru_A2818 are separated by 246 nucleotides Rru_A2815: Rru_A2815 - Molybdopterin biosynthesis MoaE (NCBI), at 3,247,292 to 3,247,780 _A2815 Rru_A2816: Rru_A2816 - Transcriptional Regulator, TetR family (NCBI), at 3,247,917 to 3,248,495 _A2816 Rru_A2817: Rru_A2817 - Phasin (NCBI), at 3,248,647 to 3,248,997 _A2817 Rru_A2818: Rru_A2818 - Alanine--tRNA ligase (NCBI), at 3,249,244 to 3,251,895 _A2818 Position (kb) 3248 3249Strain fitness (log2 ratio) -3 -2 -1 0 1at 3248.034 kb on + strand, within Rru_A2816at 3248.409 kb on - strand, within Rru_A2816at 3248.493 kb on + strandat 3248.518 kb on + strandat 3248.668 kb on - strandat 3248.888 kb on + strand, within Rru_A2817at 3248.888 kb on + strand, within Rru_A2817at 3248.961 kb on + strand, within Rru_A2817at 3248.962 kb on - strand, within Rru_A2817at 3249.030 kb on - strandat 3249.030 kb on - strandat 3249.095 kb on + strandat 3249.095 kb on + strandat 3249.096 kb on - strandat 3249.096 kb on - strandat 3249.100 kb on + strandat 3249.100 kb on + strandat 3249.100 kb on + strandat 3249.101 kb on - strandat 3249.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,248,034 + Rru_A2816 0.20 -0.7
3,248,409 - Rru_A2816 0.85 -0.7
3,248,493 + -1.7
3,248,518 + +0.3
3,248,668 - -1.5
3,248,888 + Rru_A2817 0.69 +0.9
3,248,888 + Rru_A2817 0.69 +0.4
3,248,961 + Rru_A2817 0.89 +0.6
3,248,962 - Rru_A2817 0.90 -0.2
3,249,030 - +0.0
3,249,030 - -0.4
3,249,095 + -0.2
3,249,095 + +0.0
3,249,096 - -0.2
3,249,096 - +0.7
3,249,100 + -0.1
3,249,100 + -3.2
3,249,100 + -0.2
3,249,101 - +0.0
3,249,101 - -1.8

Or see this region's nucleotide sequence