Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2632

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2630 and Rru_A2631 overlap by 8 nucleotidesRru_A2631 and Rru_A2632 are separated by 17 nucleotidesRru_A2632 and Rru_A2633 are separated by 88 nucleotidesRru_A2633 and Rru_A2634 overlap by 8 nucleotides Rru_A2630: Rru_A2630 - ROK (NCBI), at 3,059,652 to 3,060,584 _A2630 Rru_A2631: Rru_A2631 - hypothetical protein (NCBI), at 3,060,577 to 3,061,185 _A2631 Rru_A2632: Rru_A2632 - Peptidoglycan-binding domain 1 (NCBI), at 3,061,203 to 3,061,553 _A2632 Rru_A2633: Rru_A2633 - ABC transporter component (NCBI), at 3,061,642 to 3,062,298 _A2633 Rru_A2634: Rru_A2634 - Cobalt transport protein (NCBI), at 3,062,291 to 3,063,238 _A2634 Position (kb) 3061 3062Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3060.371 kb on + strand, within Rru_A2630at 3060.371 kb on + strand, within Rru_A2630at 3060.429 kb on + strand, within Rru_A2630at 3060.589 kb on + strandat 3060.589 kb on + strandat 3060.589 kb on + strandat 3060.590 kb on - strandat 3060.590 kb on - strandat 3060.590 kb on - strandat 3060.590 kb on - strandat 3060.590 kb on - strandat 3060.590 kb on - strandat 3060.590 kb on - strandat 3060.590 kb on - strandat 3060.596 kb on - strandat 3060.596 kb on - strandat 3060.713 kb on - strand, within Rru_A2631at 3060.713 kb on - strand, within Rru_A2631at 3060.718 kb on + strand, within Rru_A2631at 3060.718 kb on + strand, within Rru_A2631at 3060.718 kb on + strand, within Rru_A2631at 3060.719 kb on - strand, within Rru_A2631at 3060.719 kb on - strand, within Rru_A2631at 3061.132 kb on + strandat 3061.144 kb on + strandat 3061.144 kb on + strandat 3061.145 kb on - strandat 3061.391 kb on - strand, within Rru_A2632at 3061.566 kb on + strandat 3061.566 kb on + strandat 3061.566 kb on + strandat 3061.567 kb on - strandat 3061.567 kb on - strandat 3061.567 kb on - strandat 3061.569 kb on - strandat 3061.569 kb on - strandat 3061.569 kb on - strandat 3061.644 kb on - strandat 3061.768 kb on - strand, within Rru_A2633at 3061.768 kb on - strand, within Rru_A2633at 3061.893 kb on + strand, within Rru_A2633at 3061.893 kb on + strand, within Rru_A2633at 3061.893 kb on + strand, within Rru_A2633at 3061.893 kb on + strand, within Rru_A2633at 3061.893 kb on + strand, within Rru_A2633at 3061.893 kb on + strand, within Rru_A2633at 3061.894 kb on - strand, within Rru_A2633at 3061.894 kb on - strand, within Rru_A2633at 3061.894 kb on - strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.895 kb on + strand, within Rru_A2633at 3061.896 kb on - strand, within Rru_A2633at 3061.896 kb on - strand, within Rru_A2633at 3061.896 kb on - strand, within Rru_A2633at 3061.896 kb on - strand, within Rru_A2633at 3061.896 kb on - strand, within Rru_A2633at 3061.896 kb on - strand, within Rru_A2633at 3061.896 kb on - strand, within Rru_A2633at 3061.896 kb on - strand, within Rru_A2633at 3061.896 kb on - strand, within Rru_A2633at 3062.057 kb on + strand, within Rru_A2633at 3062.057 kb on + strand, within Rru_A2633at 3062.057 kb on + strand, within Rru_A2633at 3062.057 kb on + strand, within Rru_A2633at 3062.081 kb on + strand, within Rru_A2633at 3062.082 kb on - strand, within Rru_A2633at 3062.082 kb on - strand, within Rru_A2633at 3062.082 kb on - strand, within Rru_A2633at 3062.268 kb on - strandat 3062.493 kb on + strand, within Rru_A2634at 3062.494 kb on - strand, within Rru_A2634at 3062.494 kb on - strand, within Rru_A2634at 3062.509 kb on - strand, within Rru_A2634at 3062.512 kb on + strand, within Rru_A2634at 3062.512 kb on + strand, within Rru_A2634at 3062.513 kb on - strand, within Rru_A2634at 3062.513 kb on - strand, within Rru_A2634at 3062.513 kb on - strand, within Rru_A2634at 3062.513 kb on - strand, within Rru_A2634

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,060,371 + Rru_A2630 0.77 -1.9
3,060,371 + Rru_A2630 0.77 +1.7
3,060,429 + Rru_A2630 0.83 +1.0
3,060,589 + -0.4
3,060,589 + +0.2
3,060,589 + +0.4
3,060,590 - +0.3
3,060,590 - +0.4
3,060,590 - -1.2
3,060,590 - +0.5
3,060,590 - +0.5
3,060,590 - -0.4
3,060,590 - -0.6
3,060,590 - -0.4
3,060,596 - +0.3
3,060,596 - -1.0
3,060,713 - Rru_A2631 0.22 -1.7
3,060,713 - Rru_A2631 0.22 +0.5
3,060,718 + Rru_A2631 0.23 -1.0
3,060,718 + Rru_A2631 0.23 -1.2
3,060,718 + Rru_A2631 0.23 +1.6
3,060,719 - Rru_A2631 0.23 -1.5
3,060,719 - Rru_A2631 0.23 +0.7
3,061,132 + +0.6
3,061,144 + +1.7
3,061,144 + +0.0
3,061,145 - -0.0
3,061,391 - Rru_A2632 0.54 -0.9
3,061,566 + -0.1
3,061,566 + +0.9
3,061,566 + -1.2
3,061,567 - +2.0
3,061,567 - -0.1
3,061,567 - -0.8
3,061,569 - +0.7
3,061,569 - +0.5
3,061,569 - -2.1
3,061,644 - +0.0
3,061,768 - Rru_A2633 0.19 -3.0
3,061,768 - Rru_A2633 0.19 -2.0
3,061,893 + Rru_A2633 0.38 +1.0
3,061,893 + Rru_A2633 0.38 +0.4
3,061,893 + Rru_A2633 0.38 -1.6
3,061,893 + Rru_A2633 0.38 -1.9
3,061,893 + Rru_A2633 0.38 +0.9
3,061,893 + Rru_A2633 0.38 +0.3
3,061,894 - Rru_A2633 0.38 -2.9
3,061,894 - Rru_A2633 0.38 +0.0
3,061,894 - Rru_A2633 0.38 -0.5
3,061,895 + Rru_A2633 0.39 +0.4
3,061,895 + Rru_A2633 0.39 -1.2
3,061,895 + Rru_A2633 0.39 -0.2
3,061,895 + Rru_A2633 0.39 +0.8
3,061,895 + Rru_A2633 0.39 -0.7
3,061,895 + Rru_A2633 0.39 +1.2
3,061,895 + Rru_A2633 0.39 -1.8
3,061,895 + Rru_A2633 0.39 +0.4
3,061,895 + Rru_A2633 0.39 +0.4
3,061,895 + Rru_A2633 0.39 -0.1
3,061,895 + Rru_A2633 0.39 +0.0
3,061,895 + Rru_A2633 0.39 -0.0
3,061,895 + Rru_A2633 0.39 -2.6
3,061,895 + Rru_A2633 0.39 +0.1
3,061,895 + Rru_A2633 0.39 +0.0
3,061,895 + Rru_A2633 0.39 -0.9
3,061,895 + Rru_A2633 0.39 +0.5
3,061,896 - Rru_A2633 0.39 +0.4
3,061,896 - Rru_A2633 0.39 -2.9
3,061,896 - Rru_A2633 0.39 +1.5
3,061,896 - Rru_A2633 0.39 +0.2
3,061,896 - Rru_A2633 0.39 +2.2
3,061,896 - Rru_A2633 0.39 -2.6
3,061,896 - Rru_A2633 0.39 -0.0
3,061,896 - Rru_A2633 0.39 -0.3
3,061,896 - Rru_A2633 0.39 -0.9
3,062,057 + Rru_A2633 0.63 +0.2
3,062,057 + Rru_A2633 0.63 +0.5
3,062,057 + Rru_A2633 0.63 +0.2
3,062,057 + Rru_A2633 0.63 -0.6
3,062,081 + Rru_A2633 0.67 +0.5
3,062,082 - Rru_A2633 0.67 -0.8
3,062,082 - Rru_A2633 0.67 -0.7
3,062,082 - Rru_A2633 0.67 +0.9
3,062,268 - +0.1
3,062,493 + Rru_A2634 0.21 +0.3
3,062,494 - Rru_A2634 0.21 -0.0
3,062,494 - Rru_A2634 0.21 +0.1
3,062,509 - Rru_A2634 0.23 +1.5
3,062,512 + Rru_A2634 0.23 -0.3
3,062,512 + Rru_A2634 0.23 +0.5
3,062,513 - Rru_A2634 0.23 -0.2
3,062,513 - Rru_A2634 0.23 +1.0
3,062,513 - Rru_A2634 0.23 +0.3
3,062,513 - Rru_A2634 0.23 -2.5

Or see this region's nucleotide sequence