Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2614

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2613 and Rru_A2614 are separated by 945 nucleotidesRru_A2614 and Rru_A2615 are separated by 338 nucleotidesRru_A2615 and Rru_A2616 are separated by 290 nucleotides Rru_A2613: Rru_A2613 - hypothetical protein (NCBI), at 3,040,435 to 3,041,973 _A2613 Rru_A2614: Rru_A2614 - Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI), at 3,042,919 to 3,043,665 _A2614 Rru_A2615: Rru_A2615 - Transcriptional Regulator, ArsR family (NCBI), at 3,044,004 to 3,044,363 _A2615 Rru_A2616: Rru_A2616 - Histone deacetylase superfamily (NCBI), at 3,044,654 to 3,045,583 _A2616 Position (kb) 3042 3043 3044Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3042.137 kb on + strandat 3042.197 kb on + strandat 3042.197 kb on + strandat 3042.197 kb on + strandat 3042.197 kb on + strandat 3042.197 kb on + strandat 3042.197 kb on + strandat 3042.198 kb on - strandat 3042.198 kb on - strandat 3042.199 kb on + strandat 3042.258 kb on + strandat 3042.258 kb on + strandat 3042.259 kb on - strandat 3042.259 kb on - strandat 3042.512 kb on + strandat 3042.513 kb on - strandat 3042.513 kb on - strandat 3042.693 kb on + strandat 3042.693 kb on + strandat 3042.715 kb on + strandat 3042.869 kb on + strandat 3042.938 kb on + strandat 3042.938 kb on + strandat 3042.938 kb on + strandat 3042.938 kb on + strandat 3042.938 kb on + strandat 3042.939 kb on - strandat 3042.939 kb on - strandat 3042.939 kb on - strandat 3042.939 kb on - strandat 3042.939 kb on - strandat 3042.953 kb on + strandat 3042.954 kb on - strandat 3042.954 kb on - strandat 3042.954 kb on - strandat 3043.157 kb on + strand, within Rru_A2614at 3043.158 kb on - strand, within Rru_A2614at 3043.928 kb on - strandat 3043.928 kb on - strandat 3043.953 kb on + strandat 3043.997 kb on + strandat 3044.075 kb on - strand, within Rru_A2615at 3044.128 kb on + strand, within Rru_A2615at 3044.128 kb on + strand, within Rru_A2615at 3044.129 kb on - strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.131 kb on + strand, within Rru_A2615at 3044.132 kb on - strand, within Rru_A2615at 3044.132 kb on - strand, within Rru_A2615at 3044.132 kb on - strand, within Rru_A2615at 3044.132 kb on - strand, within Rru_A2615at 3044.132 kb on - strand, within Rru_A2615at 3044.132 kb on - strand, within Rru_A2615at 3044.132 kb on - strand, within Rru_A2615at 3044.232 kb on + strand, within Rru_A2615at 3044.262 kb on - strand, within Rru_A2615at 3044.262 kb on - strand, within Rru_A2615at 3044.262 kb on - strand, within Rru_A2615at 3044.272 kb on - strand, within Rru_A2615at 3044.428 kb on + strandat 3044.454 kb on - strandat 3044.454 kb on - strandat 3044.484 kb on + strandat 3044.485 kb on - strandat 3044.487 kb on - strandat 3044.495 kb on + strandat 3044.581 kb on + strandat 3044.581 kb on + strandat 3044.581 kb on + strandat 3044.582 kb on - strandat 3044.582 kb on - strandat 3044.602 kb on - strandat 3044.602 kb on - strandat 3044.602 kb on - strandat 3044.602 kb on - strandat 3044.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,042,137 + +0.2
3,042,197 + +0.9
3,042,197 + +0.9
3,042,197 + -0.4
3,042,197 + +0.5
3,042,197 + +0.0
3,042,197 + -0.4
3,042,198 - +0.4
3,042,198 - -0.1
3,042,199 + -0.3
3,042,258 + +0.1
3,042,258 + -0.4
3,042,259 - -1.0
3,042,259 - -0.2
3,042,512 + +0.8
3,042,513 - -0.8
3,042,513 - +0.7
3,042,693 + +0.7
3,042,693 + -0.3
3,042,715 + +1.7
3,042,869 + +0.3
3,042,938 + -0.6
3,042,938 + -3.7
3,042,938 + -0.5
3,042,938 + +0.1
3,042,938 + +0.9
3,042,939 - +0.0
3,042,939 - +2.1
3,042,939 - -0.1
3,042,939 - -0.9
3,042,939 - -0.6
3,042,953 + -0.4
3,042,954 - +2.1
3,042,954 - -0.2
3,042,954 - +0.6
3,043,157 + Rru_A2614 0.32 -1.0
3,043,158 - Rru_A2614 0.32 +1.1
3,043,928 - +0.7
3,043,928 - +1.0
3,043,953 + -0.9
3,043,997 + -0.5
3,044,075 - Rru_A2615 0.20 +1.0
3,044,128 + Rru_A2615 0.34 -0.2
3,044,128 + Rru_A2615 0.34 +0.5
3,044,129 - Rru_A2615 0.35 +0.2
3,044,131 + Rru_A2615 0.35 +0.9
3,044,131 + Rru_A2615 0.35 -0.5
3,044,131 + Rru_A2615 0.35 +0.7
3,044,131 + Rru_A2615 0.35 -0.5
3,044,131 + Rru_A2615 0.35 -3.1
3,044,131 + Rru_A2615 0.35 +0.3
3,044,131 + Rru_A2615 0.35 +0.8
3,044,131 + Rru_A2615 0.35 +1.9
3,044,131 + Rru_A2615 0.35 +0.2
3,044,131 + Rru_A2615 0.35 +0.3
3,044,131 + Rru_A2615 0.35 +1.9
3,044,131 + Rru_A2615 0.35 -0.4
3,044,131 + Rru_A2615 0.35 +0.3
3,044,131 + Rru_A2615 0.35 +0.2
3,044,132 - Rru_A2615 0.36 +0.5
3,044,132 - Rru_A2615 0.36 +0.0
3,044,132 - Rru_A2615 0.36 -0.8
3,044,132 - Rru_A2615 0.36 -0.3
3,044,132 - Rru_A2615 0.36 -2.8
3,044,132 - Rru_A2615 0.36 -0.8
3,044,132 - Rru_A2615 0.36 -0.7
3,044,232 + Rru_A2615 0.63 -0.4
3,044,262 - Rru_A2615 0.72 -2.2
3,044,262 - Rru_A2615 0.72 -1.2
3,044,262 - Rru_A2615 0.72 -1.1
3,044,272 - Rru_A2615 0.74 +1.0
3,044,428 + +1.1
3,044,454 - +0.8
3,044,454 - +3.7
3,044,484 + -0.6
3,044,485 - +0.3
3,044,487 - -1.2
3,044,495 + +0.5
3,044,581 + +0.1
3,044,581 + -1.2
3,044,581 + +0.5
3,044,582 - -4.3
3,044,582 - -0.4
3,044,602 - -1.0
3,044,602 - -0.8
3,044,602 - +0.5
3,044,602 - -0.9
3,044,631 + +0.2

Or see this region's nucleotide sequence