Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2549

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2548 and Rru_A2549 are separated by 122 nucleotidesRru_A2549 and Rru_A2550 are separated by 17 nucleotides Rru_A2548: Rru_A2548 - hypothetical protein (NCBI), at 2,963,848 to 2,964,756 _A2548 Rru_A2549: Rru_A2549 - HAD-superfamily hydrolase subfamily IIB (NCBI), at 2,964,879 to 2,965,772 _A2549 Rru_A2550: Rru_A2550 - L-carnitine dehydratase/bile acid-inducible protein F (NCBI), at 2,965,790 to 2,967,016 _A2550 Position (kb) 2964 2965 2966Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2964.084 kb on + strand, within Rru_A2548at 2964.171 kb on + strand, within Rru_A2548at 2964.266 kb on - strand, within Rru_A2548at 2964.332 kb on - strand, within Rru_A2548at 2964.352 kb on + strand, within Rru_A2548at 2964.352 kb on + strand, within Rru_A2548at 2964.353 kb on - strand, within Rru_A2548at 2964.353 kb on - strand, within Rru_A2548at 2964.364 kb on + strand, within Rru_A2548at 2964.365 kb on - strand, within Rru_A2548at 2964.365 kb on - strand, within Rru_A2548at 2964.509 kb on - strand, within Rru_A2548at 2964.521 kb on - strand, within Rru_A2548at 2964.521 kb on - strand, within Rru_A2548at 2964.521 kb on - strand, within Rru_A2548at 2964.523 kb on + strand, within Rru_A2548at 2964.523 kb on + strand, within Rru_A2548at 2964.523 kb on + strand, within Rru_A2548at 2964.523 kb on + strand, within Rru_A2548at 2964.523 kb on + strand, within Rru_A2548at 2964.524 kb on - strand, within Rru_A2548at 2964.622 kb on + strand, within Rru_A2548at 2964.622 kb on + strand, within Rru_A2548at 2964.623 kb on - strand, within Rru_A2548at 2964.755 kb on - strandat 2964.755 kb on - strandat 2964.773 kb on - strandat 2964.778 kb on - strandat 2964.944 kb on + strandat 2964.945 kb on - strandat 2964.945 kb on - strandat 2965.182 kb on + strand, within Rru_A2549at 2965.182 kb on + strand, within Rru_A2549at 2965.182 kb on + strand, within Rru_A2549at 2965.183 kb on - strand, within Rru_A2549at 2965.183 kb on - strand, within Rru_A2549at 2965.584 kb on + strand, within Rru_A2549at 2965.584 kb on + strand, within Rru_A2549at 2965.585 kb on - strand, within Rru_A2549at 2965.585 kb on - strand, within Rru_A2549at 2965.585 kb on - strand, within Rru_A2549at 2965.585 kb on - strand, within Rru_A2549at 2966.014 kb on + strand, within Rru_A2550at 2966.015 kb on - strand, within Rru_A2550at 2966.330 kb on - strand, within Rru_A2550at 2966.331 kb on + strand, within Rru_A2550at 2966.331 kb on + strand, within Rru_A2550at 2966.331 kb on + strand, within Rru_A2550at 2966.331 kb on + strand, within Rru_A2550at 2966.332 kb on - strand, within Rru_A2550at 2966.338 kb on - strand, within Rru_A2550at 2966.338 kb on - strand, within Rru_A2550at 2966.338 kb on - strand, within Rru_A2550at 2966.379 kb on + strand, within Rru_A2550at 2966.380 kb on - strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.473 kb on - strand, within Rru_A2550at 2966.473 kb on - strand, within Rru_A2550

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,964,084 + Rru_A2548 0.26 +0.3
2,964,171 + Rru_A2548 0.36 -2.7
2,964,266 - Rru_A2548 0.46 +0.1
2,964,332 - Rru_A2548 0.53 +0.2
2,964,352 + Rru_A2548 0.55 +0.6
2,964,352 + Rru_A2548 0.55 +0.3
2,964,353 - Rru_A2548 0.56 +0.8
2,964,353 - Rru_A2548 0.56 -0.8
2,964,364 + Rru_A2548 0.57 -1.0
2,964,365 - Rru_A2548 0.57 -0.4
2,964,365 - Rru_A2548 0.57 +0.5
2,964,509 - Rru_A2548 0.73 +0.1
2,964,521 - Rru_A2548 0.74 +0.5
2,964,521 - Rru_A2548 0.74 +1.0
2,964,521 - Rru_A2548 0.74 -0.1
2,964,523 + Rru_A2548 0.74 +0.2
2,964,523 + Rru_A2548 0.74 +0.8
2,964,523 + Rru_A2548 0.74 -0.8
2,964,523 + Rru_A2548 0.74 -0.8
2,964,523 + Rru_A2548 0.74 +0.2
2,964,524 - Rru_A2548 0.74 -0.1
2,964,622 + Rru_A2548 0.85 -1.8
2,964,622 + Rru_A2548 0.85 -0.8
2,964,623 - Rru_A2548 0.85 -0.0
2,964,755 - +1.4
2,964,755 - -3.2
2,964,773 - +1.1
2,964,778 - +0.9
2,964,944 + -0.9
2,964,945 - -0.0
2,964,945 - -2.8
2,965,182 + Rru_A2549 0.34 -3.0
2,965,182 + Rru_A2549 0.34 -2.7
2,965,182 + Rru_A2549 0.34 -2.7
2,965,183 - Rru_A2549 0.34 -4.4
2,965,183 - Rru_A2549 0.34 -0.0
2,965,584 + Rru_A2549 0.79 -1.9
2,965,584 + Rru_A2549 0.79 -1.2
2,965,585 - Rru_A2549 0.79 -2.3
2,965,585 - Rru_A2549 0.79 -2.8
2,965,585 - Rru_A2549 0.79 -0.4
2,965,585 - Rru_A2549 0.79 -5.2
2,966,014 + Rru_A2550 0.18 -0.0
2,966,015 - Rru_A2550 0.18 +0.5
2,966,330 - Rru_A2550 0.44 +0.9
2,966,331 + Rru_A2550 0.44 +2.1
2,966,331 + Rru_A2550 0.44 -0.8
2,966,331 + Rru_A2550 0.44 +0.1
2,966,331 + Rru_A2550 0.44 +0.3
2,966,332 - Rru_A2550 0.44 -1.4
2,966,338 - Rru_A2550 0.45 +0.0
2,966,338 - Rru_A2550 0.45 -1.0
2,966,338 - Rru_A2550 0.45 -0.5
2,966,379 + Rru_A2550 0.48 +0.1
2,966,380 - Rru_A2550 0.48 +0.7
2,966,470 + Rru_A2550 0.55 -1.8
2,966,470 + Rru_A2550 0.55 +0.2
2,966,470 + Rru_A2550 0.55 +0.1
2,966,470 + Rru_A2550 0.55 -1.5
2,966,470 + Rru_A2550 0.55 +2.9
2,966,471 - Rru_A2550 0.56 +0.5
2,966,471 - Rru_A2550 0.56 +1.2
2,966,471 - Rru_A2550 0.56 +2.4
2,966,471 - Rru_A2550 0.56 +0.1
2,966,471 - Rru_A2550 0.56 -0.5
2,966,471 - Rru_A2550 0.56 -0.1
2,966,472 + Rru_A2550 0.56 +1.0
2,966,472 + Rru_A2550 0.56 +1.6
2,966,472 + Rru_A2550 0.56 -0.7
2,966,472 + Rru_A2550 0.56 -0.6
2,966,472 + Rru_A2550 0.56 -0.3
2,966,473 - Rru_A2550 0.56 -4.3
2,966,473 - Rru_A2550 0.56 -1.7

Or see this region's nucleotide sequence