Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2548 and Rru_A2549 are separated by 122 nucleotides Rru_A2549 and Rru_A2550 are separated by 17 nucleotides
Rru_A2548: Rru_A2548 - hypothetical protein (NCBI), at 2,963,848 to 2,964,756
_A2548
Rru_A2549: Rru_A2549 - HAD-superfamily hydrolase subfamily IIB (NCBI), at 2,964,879 to 2,965,772
_A2549
Rru_A2550: Rru_A2550 - L-carnitine dehydratase/bile acid-inducible protein F (NCBI), at 2,965,790 to 2,967,016
_A2550
Position (kb)
2964
2965
2966 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2964.084 kb on + strand, within Rru_A2548 at 2964.171 kb on + strand, within Rru_A2548 at 2964.266 kb on - strand, within Rru_A2548 at 2964.332 kb on - strand, within Rru_A2548 at 2964.352 kb on + strand, within Rru_A2548 at 2964.352 kb on + strand, within Rru_A2548 at 2964.353 kb on - strand, within Rru_A2548 at 2964.353 kb on - strand, within Rru_A2548 at 2964.364 kb on + strand, within Rru_A2548 at 2964.365 kb on - strand, within Rru_A2548 at 2964.365 kb on - strand, within Rru_A2548 at 2964.509 kb on - strand, within Rru_A2548 at 2964.521 kb on - strand, within Rru_A2548 at 2964.521 kb on - strand, within Rru_A2548 at 2964.521 kb on - strand, within Rru_A2548 at 2964.523 kb on + strand, within Rru_A2548 at 2964.523 kb on + strand, within Rru_A2548 at 2964.523 kb on + strand, within Rru_A2548 at 2964.523 kb on + strand, within Rru_A2548 at 2964.523 kb on + strand, within Rru_A2548 at 2964.524 kb on - strand, within Rru_A2548 at 2964.622 kb on + strand, within Rru_A2548 at 2964.622 kb on + strand, within Rru_A2548 at 2964.623 kb on - strand, within Rru_A2548 at 2964.755 kb on - strand at 2964.755 kb on - strand at 2964.773 kb on - strand at 2964.778 kb on - strand at 2964.944 kb on + strand at 2964.945 kb on - strand at 2964.945 kb on - strand at 2965.182 kb on + strand, within Rru_A2549 at 2965.182 kb on + strand, within Rru_A2549 at 2965.182 kb on + strand, within Rru_A2549 at 2965.183 kb on - strand, within Rru_A2549 at 2965.183 kb on - strand, within Rru_A2549 at 2965.584 kb on + strand, within Rru_A2549 at 2965.584 kb on + strand, within Rru_A2549 at 2965.585 kb on - strand, within Rru_A2549 at 2965.585 kb on - strand, within Rru_A2549 at 2965.585 kb on - strand, within Rru_A2549 at 2965.585 kb on - strand, within Rru_A2549 at 2966.014 kb on + strand, within Rru_A2550 at 2966.015 kb on - strand, within Rru_A2550 at 2966.330 kb on - strand, within Rru_A2550 at 2966.331 kb on + strand, within Rru_A2550 at 2966.331 kb on + strand, within Rru_A2550 at 2966.331 kb on + strand, within Rru_A2550 at 2966.331 kb on + strand, within Rru_A2550 at 2966.332 kb on - strand, within Rru_A2550 at 2966.338 kb on - strand, within Rru_A2550 at 2966.338 kb on - strand, within Rru_A2550 at 2966.338 kb on - strand, within Rru_A2550 at 2966.379 kb on + strand, within Rru_A2550 at 2966.380 kb on - strand, within Rru_A2550 at 2966.470 kb on + strand, within Rru_A2550 at 2966.470 kb on + strand, within Rru_A2550 at 2966.470 kb on + strand, within Rru_A2550 at 2966.470 kb on + strand, within Rru_A2550 at 2966.470 kb on + strand, within Rru_A2550 at 2966.471 kb on - strand, within Rru_A2550 at 2966.471 kb on - strand, within Rru_A2550 at 2966.471 kb on - strand, within Rru_A2550 at 2966.471 kb on - strand, within Rru_A2550 at 2966.471 kb on - strand, within Rru_A2550 at 2966.471 kb on - strand, within Rru_A2550 at 2966.472 kb on + strand, within Rru_A2550 at 2966.472 kb on + strand, within Rru_A2550 at 2966.472 kb on + strand, within Rru_A2550 at 2966.472 kb on + strand, within Rru_A2550 at 2966.472 kb on + strand, within Rru_A2550 at 2966.473 kb on - strand, within Rru_A2550 at 2966.473 kb on - strand, within Rru_A2550
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 2,964,084 + Rru_A2548 0.26 +0.3 2,964,171 + Rru_A2548 0.36 -2.7 2,964,266 - Rru_A2548 0.46 +0.1 2,964,332 - Rru_A2548 0.53 +0.2 2,964,352 + Rru_A2548 0.55 +0.6 2,964,352 + Rru_A2548 0.55 +0.3 2,964,353 - Rru_A2548 0.56 +0.8 2,964,353 - Rru_A2548 0.56 -0.8 2,964,364 + Rru_A2548 0.57 -1.0 2,964,365 - Rru_A2548 0.57 -0.4 2,964,365 - Rru_A2548 0.57 +0.5 2,964,509 - Rru_A2548 0.73 +0.1 2,964,521 - Rru_A2548 0.74 +0.5 2,964,521 - Rru_A2548 0.74 +1.0 2,964,521 - Rru_A2548 0.74 -0.1 2,964,523 + Rru_A2548 0.74 +0.2 2,964,523 + Rru_A2548 0.74 +0.8 2,964,523 + Rru_A2548 0.74 -0.8 2,964,523 + Rru_A2548 0.74 -0.8 2,964,523 + Rru_A2548 0.74 +0.2 2,964,524 - Rru_A2548 0.74 -0.1 2,964,622 + Rru_A2548 0.85 -1.8 2,964,622 + Rru_A2548 0.85 -0.8 2,964,623 - Rru_A2548 0.85 -0.0 2,964,755 - +1.4 2,964,755 - -3.2 2,964,773 - +1.1 2,964,778 - +0.9 2,964,944 + -0.9 2,964,945 - -0.0 2,964,945 - -2.8 2,965,182 + Rru_A2549 0.34 -3.0 2,965,182 + Rru_A2549 0.34 -2.7 2,965,182 + Rru_A2549 0.34 -2.7 2,965,183 - Rru_A2549 0.34 -4.4 2,965,183 - Rru_A2549 0.34 -0.0 2,965,584 + Rru_A2549 0.79 -1.9 2,965,584 + Rru_A2549 0.79 -1.2 2,965,585 - Rru_A2549 0.79 -2.3 2,965,585 - Rru_A2549 0.79 -2.8 2,965,585 - Rru_A2549 0.79 -0.4 2,965,585 - Rru_A2549 0.79 -5.2 2,966,014 + Rru_A2550 0.18 -0.0 2,966,015 - Rru_A2550 0.18 +0.5 2,966,330 - Rru_A2550 0.44 +0.9 2,966,331 + Rru_A2550 0.44 +2.1 2,966,331 + Rru_A2550 0.44 -0.8 2,966,331 + Rru_A2550 0.44 +0.1 2,966,331 + Rru_A2550 0.44 +0.3 2,966,332 - Rru_A2550 0.44 -1.4 2,966,338 - Rru_A2550 0.45 +0.0 2,966,338 - Rru_A2550 0.45 -1.0 2,966,338 - Rru_A2550 0.45 -0.5 2,966,379 + Rru_A2550 0.48 +0.1 2,966,380 - Rru_A2550 0.48 +0.7 2,966,470 + Rru_A2550 0.55 -1.8 2,966,470 + Rru_A2550 0.55 +0.2 2,966,470 + Rru_A2550 0.55 +0.1 2,966,470 + Rru_A2550 0.55 -1.5 2,966,470 + Rru_A2550 0.55 +2.9 2,966,471 - Rru_A2550 0.56 +0.5 2,966,471 - Rru_A2550 0.56 +1.2 2,966,471 - Rru_A2550 0.56 +2.4 2,966,471 - Rru_A2550 0.56 +0.1 2,966,471 - Rru_A2550 0.56 -0.5 2,966,471 - Rru_A2550 0.56 -0.1 2,966,472 + Rru_A2550 0.56 +1.0 2,966,472 + Rru_A2550 0.56 +1.6 2,966,472 + Rru_A2550 0.56 -0.7 2,966,472 + Rru_A2550 0.56 -0.6 2,966,472 + Rru_A2550 0.56 -0.3 2,966,473 - Rru_A2550 0.56 -4.3 2,966,473 - Rru_A2550 0.56 -1.7
Or see this region's nucleotide sequence