Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2469

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2466 and Rru_A2467 are separated by 132 nucleotidesRru_A2467 and Rru_A2468 are separated by 255 nucleotidesRru_A2468 and Rru_A2469 are separated by 13 nucleotidesRru_A2469 and Rru_A2470 are separated by 81 nucleotides Rru_A2466: Rru_A2466 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 2,866,351 to 2,866,791 _A2466 Rru_A2467: Rru_A2467 - Ribosomal protein L36 (NCBI), at 2,866,924 to 2,867,100 _A2467 Rru_A2468: Rru_A2468 - FeoA (NCBI), at 2,867,356 to 2,867,643 _A2468 Rru_A2469: Rru_A2469 - FeoA (NCBI), at 2,867,657 to 2,867,902 _A2469 Rru_A2470: Rru_A2470 - Ferrous iron transport protein B (NCBI), at 2,867,984 to 2,870,344 _A2470 Position (kb) 2867 2868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2866.680 kb on + strand, within Rru_A2466at 2866.790 kb on - strandat 2866.880 kb on + strandat 2866.880 kb on + strandat 2866.882 kb on + strandat 2866.887 kb on + strandat 2866.887 kb on + strandat 2866.887 kb on + strandat 2866.887 kb on + strandat 2866.887 kb on + strandat 2866.888 kb on - strandat 2866.888 kb on - strandat 2866.888 kb on - strandat 2866.888 kb on - strandat 2867.267 kb on + strandat 2867.267 kb on + strandat 2867.267 kb on + strandat 2867.323 kb on + strandat 2867.323 kb on + strandat 2867.323 kb on + strandat 2867.323 kb on + strandat 2867.324 kb on - strandat 2867.324 kb on - strandat 2867.324 kb on - strandat 2867.324 kb on - strandat 2867.630 kb on + strandat 2867.630 kb on + strandat 2867.631 kb on - strandat 2867.631 kb on - strandat 2867.739 kb on + strand, within Rru_A2469at 2867.740 kb on - strand, within Rru_A2469at 2867.983 kb on + strandat 2867.983 kb on + strandat 2867.983 kb on + strandat 2867.983 kb on + strandat 2867.984 kb on - strandat 2867.984 kb on - strandat 2867.984 kb on - strandat 2868.165 kb on - strandat 2868.218 kb on + strandat 2868.218 kb on + strandat 2868.218 kb on + strandat 2868.218 kb on + strandat 2868.219 kb on - strandat 2868.219 kb on - strandat 2868.250 kb on + strand, within Rru_A2470at 2868.251 kb on - strand, within Rru_A2470at 2868.288 kb on - strand, within Rru_A2470at 2868.866 kb on + strand, within Rru_A2470at 2868.866 kb on + strand, within Rru_A2470at 2868.866 kb on + strand, within Rru_A2470at 2868.866 kb on + strand, within Rru_A2470at 2868.866 kb on + strand, within Rru_A2470at 2868.867 kb on - strand, within Rru_A2470at 2868.867 kb on - strand, within Rru_A2470at 2868.867 kb on - strand, within Rru_A2470

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,866,680 + Rru_A2466 0.75 +0.9
2,866,790 - -0.4
2,866,880 + -0.7
2,866,880 + -0.8
2,866,882 + +1.3
2,866,887 + -0.0
2,866,887 + -3.0
2,866,887 + -0.4
2,866,887 + -0.3
2,866,887 + -2.1
2,866,888 - -0.8
2,866,888 - +1.0
2,866,888 - +0.0
2,866,888 - -0.3
2,867,267 + -0.1
2,867,267 + +0.0
2,867,267 + -0.1
2,867,323 + -2.7
2,867,323 + -0.1
2,867,323 + +1.2
2,867,323 + -1.1
2,867,324 - -2.1
2,867,324 - -3.8
2,867,324 - -3.2
2,867,324 - -1.1
2,867,630 + -0.2
2,867,630 + +0.1
2,867,631 - -1.8
2,867,631 - -2.0
2,867,739 + Rru_A2469 0.33 +0.2
2,867,740 - Rru_A2469 0.34 -1.8
2,867,983 + -0.5
2,867,983 + +0.2
2,867,983 + -0.1
2,867,983 + -1.6
2,867,984 - -1.0
2,867,984 - -3.6
2,867,984 - -1.7
2,868,165 - -1.1
2,868,218 + -0.1
2,868,218 + -0.1
2,868,218 + +0.5
2,868,218 + +0.4
2,868,219 - +0.9
2,868,219 - +0.3
2,868,250 + Rru_A2470 0.11 +0.1
2,868,251 - Rru_A2470 0.11 +1.4
2,868,288 - Rru_A2470 0.13 -0.8
2,868,866 + Rru_A2470 0.37 +0.4
2,868,866 + Rru_A2470 0.37 +0.5
2,868,866 + Rru_A2470 0.37 -0.2
2,868,866 + Rru_A2470 0.37 +0.4
2,868,866 + Rru_A2470 0.37 -3.1
2,868,867 - Rru_A2470 0.37 +0.4
2,868,867 - Rru_A2470 0.37 +0.8
2,868,867 - Rru_A2470 0.37 +0.0

Or see this region's nucleotide sequence