Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2438

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2436 and Rru_A2437 are separated by 28 nucleotidesRru_A2437 and Rru_A2438 are separated by 8 nucleotidesRru_A2438 and Rru_A2439 are separated by 1 nucleotidesRru_A2439 and Rru_A2440 are separated by 39 nucleotides Rru_A2436: Rru_A2436 - Leucyltransferase (NCBI), at 2,834,821 to 2,835,462 _A2436 Rru_A2437: Rru_A2437 - cellulase-like protein (NCBI), at 2,835,491 to 2,835,982 _A2437 Rru_A2438: Rru_A2438 - Mammalian cell entry related (NCBI), at 2,835,991 to 2,836,446 _A2438 Rru_A2439: Rru_A2439 - Mammalian cell entry related (NCBI), at 2,836,448 to 2,837,263 _A2439 Rru_A2440: Rru_A2440 - NADH:ubiquinone oxidoreductase 17.2 kD subunit (NCBI), at 2,837,303 to 2,837,659 _A2440 Position (kb) 2835 2836 2837Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2835.015 kb on + strand, within Rru_A2436at 2835.135 kb on + strand, within Rru_A2436at 2835.493 kb on - strandat 2835.986 kb on - strandat 2835.986 kb on - strandat 2835.986 kb on - strandat 2836.526 kb on - strandat 2836.538 kb on - strand, within Rru_A2439at 2836.538 kb on - strand, within Rru_A2439at 2836.538 kb on - strand, within Rru_A2439at 2836.550 kb on - strand, within Rru_A2439at 2836.562 kb on - strand, within Rru_A2439at 2837.323 kb on - strandat 2837.380 kb on - strand, within Rru_A2440at 2837.380 kb on - strand, within Rru_A2440

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,835,015 + Rru_A2436 0.30 -2.8
2,835,135 + Rru_A2436 0.49 +1.8
2,835,493 - -0.5
2,835,986 - +0.5
2,835,986 - -0.6
2,835,986 - -0.2
2,836,526 - -0.4
2,836,538 - Rru_A2439 0.11 +0.7
2,836,538 - Rru_A2439 0.11 -0.5
2,836,538 - Rru_A2439 0.11 +0.0
2,836,550 - Rru_A2439 0.12 -0.1
2,836,562 - Rru_A2439 0.14 -0.1
2,837,323 - -2.9
2,837,380 - Rru_A2440 0.22 +0.9
2,837,380 - Rru_A2440 0.22 -4.7

Or see this region's nucleotide sequence