Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2286 and Rru_A2287 are separated by 219 nucleotides Rru_A2287 and Rru_A2288 are separated by 32 nucleotides Rru_A2288 and Rru_A2289 are separated by 308 nucleotides
Rru_A2286: Rru_A2286 - Nitrogenase MoFe cofactor biosynthesis protein NifE (NCBI), at 2,644,613 to 2,646,061
_A2286
Rru_A2287: Rru_A2287 - Protein of unknown function DUF86 (NCBI), at 2,646,281 to 2,646,616
_A2287
Rru_A2288: Rru_A2288 - DNA polymerase, beta-like region (NCBI), at 2,646,649 to 2,646,939
_A2288
Rru_A2289: Rru_A2289 - Sulfate adenylyltransferase, small subunit (NCBI), at 2,647,248 to 2,648,138
_A2289
Position (kb)
2646
2647 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2645.706 kb on + strand, within Rru_A2286 at 2645.707 kb on - strand, within Rru_A2286 at 2645.707 kb on - strand, within Rru_A2286 at 2645.848 kb on + strand, within Rru_A2286 at 2645.849 kb on - strand, within Rru_A2286 at 2646.144 kb on - strand at 2646.231 kb on - strand at 2646.254 kb on + strand at 2646.254 kb on + strand at 2646.255 kb on - strand at 2646.255 kb on - strand at 2646.255 kb on - strand at 2646.547 kb on + strand, within Rru_A2287 at 2646.573 kb on + strand, within Rru_A2287 at 2646.573 kb on + strand, within Rru_A2287 at 2646.573 kb on + strand, within Rru_A2287 at 2646.574 kb on - strand, within Rru_A2287 at 2646.574 kb on - strand, within Rru_A2287 at 2646.912 kb on + strand at 2646.970 kb on + strand at 2647.018 kb on + strand at 2647.019 kb on - strand at 2647.019 kb on - strand at 2647.019 kb on - strand at 2647.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 2,645,706 + Rru_A2286 0.75 -0.0 2,645,707 - Rru_A2286 0.76 -2.3 2,645,707 - Rru_A2286 0.76 -0.1 2,645,848 + Rru_A2286 0.85 +0.6 2,645,849 - Rru_A2286 0.85 -0.1 2,646,144 - +1.4 2,646,231 - +1.6 2,646,254 + +1.0 2,646,254 + +0.6 2,646,255 - +0.8 2,646,255 - -0.7 2,646,255 - -0.5 2,646,547 + Rru_A2287 0.79 -0.4 2,646,573 + Rru_A2287 0.87 -0.5 2,646,573 + Rru_A2287 0.87 +1.5 2,646,573 + Rru_A2287 0.87 +0.2 2,646,574 - Rru_A2287 0.87 -0.0 2,646,574 - Rru_A2287 0.87 +0.4 2,646,912 + -0.2 2,646,970 + +0.5 2,647,018 + +2.2 2,647,019 - +1.6 2,647,019 - -0.1 2,647,019 - +0.4 2,647,019 - -0.8
Or see this region's nucleotide sequence