Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2276

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2274 and Rru_A2275 overlap by 4 nucleotidesRru_A2275 and Rru_A2276 overlap by 4 nucleotidesRru_A2276 and Rru_A2277 are separated by 5 nucleotides Rru_A2274: Rru_A2274 - ABC transporter component (NCBI), at 2,632,950 to 2,633,735 _A2274 Rru_A2275: Rru_A2275 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,633,732 to 2,634,631 _A2275 Rru_A2276: Rru_A2276 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,634,628 to 2,635,572 _A2276 Rru_A2277: Rru_A2277 - Nickel ABC transporter, periplasmic nickel-binding (NCBI), at 2,635,578 to 2,637,239 _A2277 Position (kb) 2634 2635 2636Strain fitness (log2 ratio) -2 -1 0 1at 2634.120 kb on + strand, within Rru_A2275at 2634.120 kb on + strand, within Rru_A2275at 2634.121 kb on - strand, within Rru_A2275at 2634.677 kb on + strandat 2634.677 kb on + strandat 2634.677 kb on + strandat 2634.677 kb on + strandat 2634.677 kb on + strandat 2634.678 kb on - strandat 2634.898 kb on - strand, within Rru_A2276at 2634.945 kb on - strand, within Rru_A2276at 2634.945 kb on - strand, within Rru_A2276at 2634.947 kb on + strand, within Rru_A2276at 2635.047 kb on + strand, within Rru_A2276at 2635.047 kb on + strand, within Rru_A2276at 2635.048 kb on - strand, within Rru_A2276at 2635.048 kb on - strand, within Rru_A2276at 2635.048 kb on - strand, within Rru_A2276at 2635.048 kb on - strand, within Rru_A2276at 2635.048 kb on - strand, within Rru_A2276at 2635.048 kb on - strand, within Rru_A2276at 2635.048 kb on - strand, within Rru_A2276at 2635.048 kb on - strand, within Rru_A2276at 2635.048 kb on - strand, within Rru_A2276at 2635.284 kb on - strand, within Rru_A2276at 2635.284 kb on - strand, within Rru_A2276at 2635.284 kb on - strand, within Rru_A2276at 2635.322 kb on + strand, within Rru_A2276at 2635.323 kb on - strand, within Rru_A2276at 2635.323 kb on - strand, within Rru_A2276at 2635.371 kb on - strand, within Rru_A2276at 2635.460 kb on + strand, within Rru_A2276at 2635.460 kb on + strand, within Rru_A2276at 2635.461 kb on - strand, within Rru_A2276at 2635.572 kb on + strandat 2635.572 kb on + strandat 2635.696 kb on + strandat 2635.735 kb on + strandat 2635.735 kb on + strandat 2635.735 kb on + strandat 2635.736 kb on - strandat 2636.158 kb on + strand, within Rru_A2277at 2636.159 kb on - strand, within Rru_A2277at 2636.159 kb on - strand, within Rru_A2277at 2636.159 kb on - strand, within Rru_A2277at 2636.164 kb on + strand, within Rru_A2277at 2636.165 kb on - strand, within Rru_A2277at 2636.165 kb on - strand, within Rru_A2277at 2636.236 kb on + strand, within Rru_A2277at 2636.236 kb on + strand, within Rru_A2277at 2636.236 kb on + strand, within Rru_A2277at 2636.237 kb on - strand, within Rru_A2277at 2636.237 kb on - strand, within Rru_A2277at 2636.373 kb on - strand, within Rru_A2277at 2636.374 kb on + strand, within Rru_A2277at 2636.375 kb on - strand, within Rru_A2277at 2636.434 kb on + strand, within Rru_A2277at 2636.434 kb on + strand, within Rru_A2277at 2636.435 kb on - strand, within Rru_A2277at 2636.515 kb on + strand, within Rru_A2277at 2636.515 kb on + strand, within Rru_A2277at 2636.515 kb on + strand, within Rru_A2277at 2636.516 kb on - strand, within Rru_A2277at 2636.537 kb on - strand, within Rru_A2277at 2636.563 kb on + strand, within Rru_A2277at 2636.564 kb on - strand, within Rru_A2277

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,634,120 + Rru_A2275 0.43 +0.7
2,634,120 + Rru_A2275 0.43 -1.8
2,634,121 - Rru_A2275 0.43 -0.5
2,634,677 + +1.2
2,634,677 + -0.4
2,634,677 + +0.3
2,634,677 + -0.2
2,634,677 + -0.6
2,634,678 - -0.5
2,634,898 - Rru_A2276 0.29 -1.9
2,634,945 - Rru_A2276 0.34 -0.0
2,634,945 - Rru_A2276 0.34 -0.0
2,634,947 + Rru_A2276 0.34 -0.7
2,635,047 + Rru_A2276 0.44 -0.0
2,635,047 + Rru_A2276 0.44 -0.6
2,635,048 - Rru_A2276 0.44 -0.6
2,635,048 - Rru_A2276 0.44 +0.2
2,635,048 - Rru_A2276 0.44 -0.0
2,635,048 - Rru_A2276 0.44 +0.5
2,635,048 - Rru_A2276 0.44 -1.6
2,635,048 - Rru_A2276 0.44 -0.7
2,635,048 - Rru_A2276 0.44 -0.4
2,635,048 - Rru_A2276 0.44 -0.4
2,635,048 - Rru_A2276 0.44 -0.2
2,635,284 - Rru_A2276 0.69 +0.7
2,635,284 - Rru_A2276 0.69 -1.7
2,635,284 - Rru_A2276 0.69 -0.2
2,635,322 + Rru_A2276 0.73 +1.7
2,635,323 - Rru_A2276 0.74 +0.1
2,635,323 - Rru_A2276 0.74 +0.5
2,635,371 - Rru_A2276 0.79 +0.1
2,635,460 + Rru_A2276 0.88 +0.6
2,635,460 + Rru_A2276 0.88 +0.3
2,635,461 - Rru_A2276 0.88 +1.3
2,635,572 + +0.2
2,635,572 + +0.8
2,635,696 + +0.4
2,635,735 + +0.6
2,635,735 + -0.3
2,635,735 + -0.3
2,635,736 - +0.4
2,636,158 + Rru_A2277 0.35 -1.2
2,636,159 - Rru_A2277 0.35 -0.7
2,636,159 - Rru_A2277 0.35 +0.5
2,636,159 - Rru_A2277 0.35 +0.1
2,636,164 + Rru_A2277 0.35 -1.6
2,636,165 - Rru_A2277 0.35 -0.1
2,636,165 - Rru_A2277 0.35 -0.5
2,636,236 + Rru_A2277 0.40 -1.5
2,636,236 + Rru_A2277 0.40 +0.6
2,636,236 + Rru_A2277 0.40 +1.5
2,636,237 - Rru_A2277 0.40 +1.5
2,636,237 - Rru_A2277 0.40 +0.3
2,636,373 - Rru_A2277 0.48 -0.7
2,636,374 + Rru_A2277 0.48 -0.8
2,636,375 - Rru_A2277 0.48 +0.8
2,636,434 + Rru_A2277 0.52 +0.6
2,636,434 + Rru_A2277 0.52 +0.9
2,636,435 - Rru_A2277 0.52 -2.0
2,636,515 + Rru_A2277 0.56 -0.0
2,636,515 + Rru_A2277 0.56 -0.5
2,636,515 + Rru_A2277 0.56 +1.2
2,636,516 - Rru_A2277 0.56 -0.1
2,636,537 - Rru_A2277 0.58 +1.4
2,636,563 + Rru_A2277 0.59 +1.1
2,636,564 - Rru_A2277 0.59 -0.1

Or see this region's nucleotide sequence