Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2273 and Rru_A2274 overlap by 4 nucleotides Rru_A2274 and Rru_A2275 overlap by 4 nucleotides Rru_A2275 and Rru_A2276 overlap by 4 nucleotides Rru_A2276 and Rru_A2277 are separated by 5 nucleotides
Rru_A2273: Rru_A2273 - ABC transporter component (NCBI), at 2,632,120 to 2,632,953
_A2273
Rru_A2274: Rru_A2274 - ABC transporter component (NCBI), at 2,632,950 to 2,633,735
_A2274
Rru_A2275: Rru_A2275 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,633,732 to 2,634,631
_A2275
Rru_A2276: Rru_A2276 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,634,628 to 2,635,572
_A2276
Rru_A2277: Rru_A2277 - Nickel ABC transporter, periplasmic nickel-binding (NCBI), at 2,635,578 to 2,637,239
_A2277
Position (kb)
2633
2634
2635 Strain fitness (log2 ratio)
-2
-1
0
1 at 2632.914 kb on - strand at 2632.957 kb on - strand at 2632.972 kb on + strand at 2632.973 kb on - strand at 2634.120 kb on + strand, within Rru_A2275 at 2634.120 kb on + strand, within Rru_A2275 at 2634.121 kb on - strand, within Rru_A2275 at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.678 kb on - strand at 2634.898 kb on - strand, within Rru_A2276 at 2634.945 kb on - strand, within Rru_A2276 at 2634.945 kb on - strand, within Rru_A2276 at 2634.947 kb on + strand, within Rru_A2276 at 2635.047 kb on + strand, within Rru_A2276 at 2635.047 kb on + strand, within Rru_A2276 at 2635.048 kb on - strand, within Rru_A2276 at 2635.048 kb on - strand, within Rru_A2276 at 2635.048 kb on - strand, within Rru_A2276 at 2635.048 kb on - strand, within Rru_A2276 at 2635.048 kb on - strand, within Rru_A2276 at 2635.048 kb on - strand, within Rru_A2276 at 2635.048 kb on - strand, within Rru_A2276 at 2635.048 kb on - strand, within Rru_A2276 at 2635.048 kb on - strand, within Rru_A2276 at 2635.284 kb on - strand, within Rru_A2276 at 2635.284 kb on - strand, within Rru_A2276 at 2635.284 kb on - strand, within Rru_A2276 at 2635.322 kb on + strand, within Rru_A2276 at 2635.323 kb on - strand, within Rru_A2276 at 2635.323 kb on - strand, within Rru_A2276 at 2635.371 kb on - strand, within Rru_A2276 at 2635.460 kb on + strand, within Rru_A2276 at 2635.460 kb on + strand, within Rru_A2276 at 2635.461 kb on - strand, within Rru_A2276 at 2635.572 kb on + strand at 2635.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 2,632,914 - -0.1 2,632,957 - -1.6 2,632,972 + -0.3 2,632,973 - -0.3 2,634,120 + Rru_A2275 0.43 +0.7 2,634,120 + Rru_A2275 0.43 -1.8 2,634,121 - Rru_A2275 0.43 -0.5 2,634,677 + +1.2 2,634,677 + -0.4 2,634,677 + +0.3 2,634,677 + -0.2 2,634,677 + -0.6 2,634,678 - -0.5 2,634,898 - Rru_A2276 0.29 -1.9 2,634,945 - Rru_A2276 0.34 -0.0 2,634,945 - Rru_A2276 0.34 -0.0 2,634,947 + Rru_A2276 0.34 -0.7 2,635,047 + Rru_A2276 0.44 -0.0 2,635,047 + Rru_A2276 0.44 -0.6 2,635,048 - Rru_A2276 0.44 -0.6 2,635,048 - Rru_A2276 0.44 +0.2 2,635,048 - Rru_A2276 0.44 -0.0 2,635,048 - Rru_A2276 0.44 +0.5 2,635,048 - Rru_A2276 0.44 -1.6 2,635,048 - Rru_A2276 0.44 -0.7 2,635,048 - Rru_A2276 0.44 -0.4 2,635,048 - Rru_A2276 0.44 -0.4 2,635,048 - Rru_A2276 0.44 -0.2 2,635,284 - Rru_A2276 0.69 +0.7 2,635,284 - Rru_A2276 0.69 -1.7 2,635,284 - Rru_A2276 0.69 -0.2 2,635,322 + Rru_A2276 0.73 +1.7 2,635,323 - Rru_A2276 0.74 +0.1 2,635,323 - Rru_A2276 0.74 +0.5 2,635,371 - Rru_A2276 0.79 +0.1 2,635,460 + Rru_A2276 0.88 +0.6 2,635,460 + Rru_A2276 0.88 +0.3 2,635,461 - Rru_A2276 0.88 +1.3 2,635,572 + +0.2 2,635,572 + +0.8
Or see this region's nucleotide sequence