Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1821 and Rru_A1822 are separated by 52 nucleotides Rru_A1822 and Rru_A1823 are separated by 7 nucleotides Rru_A1823 and Rru_A1824 overlap by 8 nucleotides Rru_A1824 and Rru_A1825 are separated by 22 nucleotides
Rru_A1821: Rru_A1821 - NusB antitermination factor (NCBI), at 2,120,743 to 2,121,300
_A1821
Rru_A1822: Rru_A1822 - 6,7-dimethyl-8-ribityllumazine synthase (NCBI), at 2,121,353 to 2,121,814
_A1822
Rru_A1823: Rru_A1823 - 3,4-Dihydroxy-2-butanone 4-phosphate synthase (NCBI), at 2,121,822 to 2,122,955
_A1823
Rru_A1824: Rru_A1824 - Lumazine-binding protein (NCBI), at 2,122,948 to 2,123,538
_A1824
Rru_A1825: Rru_A1825 - bifunctional deaminase-reductase (NCBI), at 2,123,561 to 2,124,664
_A1825
Position (kb)
2121
2122
2123 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2121.355 kb on - strand at 2121.355 kb on - strand at 2121.355 kb on - strand at 2121.355 kb on - strand at 2121.355 kb on - strand at 2121.355 kb on - strand at 2121.355 kb on - strand at 2121.355 kb on - strand at 2121.357 kb on - strand at 2121.357 kb on - strand at 2121.357 kb on - strand at 2121.357 kb on - strand at 2121.887 kb on + strand at 2121.887 kb on + strand at 2121.888 kb on - strand at 2121.888 kb on - strand at 2121.888 kb on - strand at 2122.225 kb on + strand, within Rru_A1823 at 2122.226 kb on - strand, within Rru_A1823 at 2122.226 kb on - strand, within Rru_A1823 at 2122.244 kb on - strand, within Rru_A1823 at 2122.244 kb on - strand, within Rru_A1823 at 2122.244 kb on - strand, within Rru_A1823 at 2122.244 kb on - strand, within Rru_A1823 at 2122.244 kb on - strand, within Rru_A1823 at 2122.244 kb on - strand, within Rru_A1823 at 2122.244 kb on - strand, within Rru_A1823 at 2123.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 2,121,355 - -0.3 2,121,355 - -3.9 2,121,355 - -0.3 2,121,355 - -0.1 2,121,355 - -2.5 2,121,355 - +0.1 2,121,355 - -4.1 2,121,355 - -1.3 2,121,357 - -0.3 2,121,357 - -0.1 2,121,357 - -1.3 2,121,357 - -0.8 2,121,887 + -3.4 2,121,887 + +0.7 2,121,888 - -2.0 2,121,888 - -1.4 2,121,888 - -0.6 2,122,225 + Rru_A1823 0.36 -1.7 2,122,226 - Rru_A1823 0.36 +2.1 2,122,226 - Rru_A1823 0.36 -0.2 2,122,244 - Rru_A1823 0.37 -2.5 2,122,244 - Rru_A1823 0.37 -0.4 2,122,244 - Rru_A1823 0.37 -1.5 2,122,244 - Rru_A1823 0.37 -1.4 2,122,244 - Rru_A1823 0.37 -0.7 2,122,244 - Rru_A1823 0.37 -0.5 2,122,244 - Rru_A1823 0.37 -1.1 2,123,550 - -0.0
Or see this region's nucleotide sequence