Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1823

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1821 and Rru_A1822 are separated by 52 nucleotidesRru_A1822 and Rru_A1823 are separated by 7 nucleotidesRru_A1823 and Rru_A1824 overlap by 8 nucleotidesRru_A1824 and Rru_A1825 are separated by 22 nucleotides Rru_A1821: Rru_A1821 - NusB antitermination factor (NCBI), at 2,120,743 to 2,121,300 _A1821 Rru_A1822: Rru_A1822 - 6,7-dimethyl-8-ribityllumazine synthase (NCBI), at 2,121,353 to 2,121,814 _A1822 Rru_A1823: Rru_A1823 - 3,4-Dihydroxy-2-butanone 4-phosphate synthase (NCBI), at 2,121,822 to 2,122,955 _A1823 Rru_A1824: Rru_A1824 - Lumazine-binding protein (NCBI), at 2,122,948 to 2,123,538 _A1824 Rru_A1825: Rru_A1825 - bifunctional deaminase-reductase (NCBI), at 2,123,561 to 2,124,664 _A1825 Position (kb) 2121 2122 2123Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2121.355 kb on - strandat 2121.355 kb on - strandat 2121.355 kb on - strandat 2121.355 kb on - strandat 2121.355 kb on - strandat 2121.355 kb on - strandat 2121.355 kb on - strandat 2121.355 kb on - strandat 2121.357 kb on - strandat 2121.357 kb on - strandat 2121.357 kb on - strandat 2121.357 kb on - strandat 2121.887 kb on + strandat 2121.887 kb on + strandat 2121.888 kb on - strandat 2121.888 kb on - strandat 2121.888 kb on - strandat 2122.225 kb on + strand, within Rru_A1823at 2122.226 kb on - strand, within Rru_A1823at 2122.226 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2123.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,121,355 - -0.3
2,121,355 - -3.9
2,121,355 - -0.3
2,121,355 - -0.1
2,121,355 - -2.5
2,121,355 - +0.1
2,121,355 - -4.1
2,121,355 - -1.3
2,121,357 - -0.3
2,121,357 - -0.1
2,121,357 - -1.3
2,121,357 - -0.8
2,121,887 + -3.4
2,121,887 + +0.7
2,121,888 - -2.0
2,121,888 - -1.4
2,121,888 - -0.6
2,122,225 + Rru_A1823 0.36 -1.7
2,122,226 - Rru_A1823 0.36 +2.1
2,122,226 - Rru_A1823 0.36 -0.2
2,122,244 - Rru_A1823 0.37 -2.5
2,122,244 - Rru_A1823 0.37 -0.4
2,122,244 - Rru_A1823 0.37 -1.5
2,122,244 - Rru_A1823 0.37 -1.4
2,122,244 - Rru_A1823 0.37 -0.7
2,122,244 - Rru_A1823 0.37 -0.5
2,122,244 - Rru_A1823 0.37 -1.1
2,123,550 - -0.0

Or see this region's nucleotide sequence