Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1610

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1608 and Rru_A1609 are separated by 86 nucleotidesRru_A1609 and Rru_A1610 are separated by 86 nucleotidesRru_A1610 and Rru_A1611 are separated by 89 nucleotides Rru_A1608: Rru_A1608 - MscS Mechanosensitive ion channel (NCBI), at 1,901,090 to 1,903,696 _A1608 Rru_A1609: Rru_A1609 - hypothetical protein (NCBI), at 1,903,783 to 1,904,085 _A1609 Rru_A1610: Rru_A1610 - hypothetical protein (NCBI), at 1,904,172 to 1,904,954 _A1610 Rru_A1611: Rru_A1611 - Cobalamin synthesis protein/P47K (NCBI), at 1,905,044 to 1,906,144 _A1611 Position (kb) 1904 1905Strain fitness (log2 ratio) -2 -1 0 1 2at 1903.178 kb on - strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.286 kb on - strand, within Rru_A1608at 1903.286 kb on - strand, within Rru_A1608at 1903.424 kb on + strand, within Rru_A1608at 1903.424 kb on + strand, within Rru_A1608at 1903.424 kb on + strand, within Rru_A1608at 1903.424 kb on + strand, within Rru_A1608at 1903.425 kb on - strand, within Rru_A1608at 1903.425 kb on - strand, within Rru_A1608at 1903.425 kb on - strand, within Rru_A1608at 1903.426 kb on + strand, within Rru_A1608at 1903.427 kb on - strand, within Rru_A1608at 1903.717 kb on - strandat 1903.768 kb on + strandat 1903.768 kb on + strandat 1903.769 kb on - strandat 1903.798 kb on + strandat 1903.799 kb on - strandat 1903.799 kb on - strandat 1904.083 kb on + strandat 1904.083 kb on + strandat 1904.083 kb on + strandat 1904.376 kb on - strand, within Rru_A1610at 1904.796 kb on + strand, within Rru_A1610at 1904.796 kb on + strand, within Rru_A1610at 1904.797 kb on - strand, within Rru_A1610at 1904.998 kb on - strandat 1904.998 kb on - strandat 1905.053 kb on + strandat 1905.053 kb on + strandat 1905.054 kb on - strandat 1905.715 kb on + strand, within Rru_A1611at 1905.716 kb on - strand, within Rru_A1611

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,903,178 - Rru_A1608 0.80 -2.1
1,903,285 + Rru_A1608 0.84 +1.8
1,903,285 + Rru_A1608 0.84 +0.0
1,903,285 + Rru_A1608 0.84 -2.5
1,903,285 + Rru_A1608 0.84 -1.0
1,903,285 + Rru_A1608 0.84 -0.0
1,903,286 - Rru_A1608 0.84 +1.8
1,903,286 - Rru_A1608 0.84 +0.4
1,903,424 + Rru_A1608 0.90 +0.1
1,903,424 + Rru_A1608 0.90 +0.4
1,903,424 + Rru_A1608 0.90 -0.3
1,903,424 + Rru_A1608 0.90 +0.2
1,903,425 - Rru_A1608 0.90 -0.1
1,903,425 - Rru_A1608 0.90 +0.5
1,903,425 - Rru_A1608 0.90 -0.1
1,903,426 + Rru_A1608 0.90 -0.5
1,903,427 - Rru_A1608 0.90 -0.7
1,903,717 - -2.7
1,903,768 + +1.4
1,903,768 + -0.3
1,903,769 - +1.5
1,903,798 + +0.2
1,903,799 - +1.5
1,903,799 - -0.6
1,904,083 + -2.1
1,904,083 + -0.1
1,904,083 + +0.6
1,904,376 - Rru_A1610 0.26 -0.7
1,904,796 + Rru_A1610 0.80 -1.0
1,904,796 + Rru_A1610 0.80 -1.7
1,904,797 - Rru_A1610 0.80 -0.8
1,904,998 - -0.3
1,904,998 - +0.2
1,905,053 + +0.4
1,905,053 + +1.3
1,905,054 - -2.7
1,905,715 + Rru_A1611 0.61 -2.1
1,905,716 - Rru_A1611 0.61 -0.1

Or see this region's nucleotide sequence