Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1608 and Rru_A1609 are separated by 86 nucleotides Rru_A1609 and Rru_A1610 are separated by 86 nucleotides Rru_A1610 and Rru_A1611 are separated by 89 nucleotides
Rru_A1608: Rru_A1608 - MscS Mechanosensitive ion channel (NCBI), at 1,901,090 to 1,903,696
_A1608
Rru_A1609: Rru_A1609 - hypothetical protein (NCBI), at 1,903,783 to 1,904,085
_A1609
Rru_A1610: Rru_A1610 - hypothetical protein (NCBI), at 1,904,172 to 1,904,954
_A1610
Rru_A1611: Rru_A1611 - Cobalamin synthesis protein/P47K (NCBI), at 1,905,044 to 1,906,144
_A1611
Position (kb)
1904
1905 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1903.178 kb on - strand, within Rru_A1608 at 1903.285 kb on + strand, within Rru_A1608 at 1903.285 kb on + strand, within Rru_A1608 at 1903.285 kb on + strand, within Rru_A1608 at 1903.285 kb on + strand, within Rru_A1608 at 1903.285 kb on + strand, within Rru_A1608 at 1903.286 kb on - strand, within Rru_A1608 at 1903.286 kb on - strand, within Rru_A1608 at 1903.424 kb on + strand, within Rru_A1608 at 1903.424 kb on + strand, within Rru_A1608 at 1903.424 kb on + strand, within Rru_A1608 at 1903.424 kb on + strand, within Rru_A1608 at 1903.425 kb on - strand, within Rru_A1608 at 1903.425 kb on - strand, within Rru_A1608 at 1903.425 kb on - strand, within Rru_A1608 at 1903.426 kb on + strand, within Rru_A1608 at 1903.427 kb on - strand, within Rru_A1608 at 1903.717 kb on - strand at 1903.768 kb on + strand at 1903.768 kb on + strand at 1903.769 kb on - strand at 1903.798 kb on + strand at 1903.799 kb on - strand at 1903.799 kb on - strand at 1904.083 kb on + strand at 1904.083 kb on + strand at 1904.083 kb on + strand at 1904.376 kb on - strand, within Rru_A1610 at 1904.796 kb on + strand, within Rru_A1610 at 1904.796 kb on + strand, within Rru_A1610 at 1904.797 kb on - strand, within Rru_A1610 at 1904.998 kb on - strand at 1904.998 kb on - strand at 1905.053 kb on + strand at 1905.053 kb on + strand at 1905.054 kb on - strand at 1905.715 kb on + strand, within Rru_A1611 at 1905.716 kb on - strand, within Rru_A1611
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,903,178 - Rru_A1608 0.80 -2.1 1,903,285 + Rru_A1608 0.84 +1.8 1,903,285 + Rru_A1608 0.84 +0.0 1,903,285 + Rru_A1608 0.84 -2.5 1,903,285 + Rru_A1608 0.84 -1.0 1,903,285 + Rru_A1608 0.84 -0.0 1,903,286 - Rru_A1608 0.84 +1.8 1,903,286 - Rru_A1608 0.84 +0.4 1,903,424 + Rru_A1608 0.90 +0.1 1,903,424 + Rru_A1608 0.90 +0.4 1,903,424 + Rru_A1608 0.90 -0.3 1,903,424 + Rru_A1608 0.90 +0.2 1,903,425 - Rru_A1608 0.90 -0.1 1,903,425 - Rru_A1608 0.90 +0.5 1,903,425 - Rru_A1608 0.90 -0.1 1,903,426 + Rru_A1608 0.90 -0.5 1,903,427 - Rru_A1608 0.90 -0.7 1,903,717 - -2.7 1,903,768 + +1.4 1,903,768 + -0.3 1,903,769 - +1.5 1,903,798 + +0.2 1,903,799 - +1.5 1,903,799 - -0.6 1,904,083 + -2.1 1,904,083 + -0.1 1,904,083 + +0.6 1,904,376 - Rru_A1610 0.26 -0.7 1,904,796 + Rru_A1610 0.80 -1.0 1,904,796 + Rru_A1610 0.80 -1.7 1,904,797 - Rru_A1610 0.80 -0.8 1,904,998 - -0.3 1,904,998 - +0.2 1,905,053 + +0.4 1,905,053 + +1.3 1,905,054 - -2.7 1,905,715 + Rru_A1611 0.61 -2.1 1,905,716 - Rru_A1611 0.61 -0.1
Or see this region's nucleotide sequence