Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1196 and Rru_A1197 are separated by 69 nucleotides Rru_A1197 and Rru_A1198 are separated by 172 nucleotides Rru_A1198 and Rru_A1199 are separated by 124 nucleotides
Rru_A1196: Rru_A1196 - Aspartate-semialdehyde dehydrogenase, USG-1 related (NCBI), at 1,412,623 to 1,413,660
_A1196
Rru_A1197: Rru_A1197 - chemotaxis sensory transducer (NCBI), at 1,413,730 to 1,415,796
_A1197
Rru_A1198: Rru_A1198 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 1,415,969 to 1,416,574
_A1198
Rru_A1199: Rru_A1199 - Pyridoxal kinase (NCBI), at 1,416,699 to 1,417,574
_A1199
Position (kb)
1413
1414
1415
1416 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1413.658 kb on + strand at 1413.659 kb on - strand at 1413.659 kb on - strand at 1413.731 kb on + strand at 1414.852 kb on + strand, within Rru_A1197 at 1414.985 kb on + strand, within Rru_A1197 at 1414.985 kb on + strand, within Rru_A1197 at 1414.986 kb on - strand, within Rru_A1197 at 1414.986 kb on - strand, within Rru_A1197 at 1415.789 kb on - strand at 1415.811 kb on + strand at 1415.874 kb on + strand at 1415.884 kb on + strand at 1415.916 kb on + strand at 1415.917 kb on - strand at 1415.922 kb on + strand at 1415.923 kb on - strand at 1415.931 kb on - strand at 1415.932 kb on + strand at 1415.943 kb on + strand at 1415.946 kb on + strand at 1415.966 kb on + strand at 1415.967 kb on - strand at 1416.074 kb on + strand, within Rru_A1198 at 1416.074 kb on + strand, within Rru_A1198 at 1416.400 kb on + strand, within Rru_A1198 at 1416.400 kb on + strand, within Rru_A1198 at 1416.401 kb on - strand, within Rru_A1198 at 1416.432 kb on + strand, within Rru_A1198 at 1416.432 kb on + strand, within Rru_A1198 at 1416.432 kb on + strand, within Rru_A1198 at 1416.433 kb on - strand, within Rru_A1198 at 1416.440 kb on - strand, within Rru_A1198 at 1416.584 kb on + strand at 1416.584 kb on + strand at 1416.584 kb on + strand at 1416.584 kb on + strand at 1416.585 kb on - strand at 1416.680 kb on + strand at 1416.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,413,658 + -2.0 1,413,659 - -1.6 1,413,659 - +0.8 1,413,731 + -1.4 1,414,852 + Rru_A1197 0.54 -0.3 1,414,985 + Rru_A1197 0.61 -0.6 1,414,985 + Rru_A1197 0.61 -1.9 1,414,986 - Rru_A1197 0.61 +0.2 1,414,986 - Rru_A1197 0.61 -0.8 1,415,789 - -2.2 1,415,811 + +0.5 1,415,874 + -0.5 1,415,884 + -0.0 1,415,916 + -0.6 1,415,917 - +0.1 1,415,922 + +0.2 1,415,923 - +0.2 1,415,931 - -0.2 1,415,932 + +0.6 1,415,943 + -0.3 1,415,946 + +0.2 1,415,966 + +0.3 1,415,967 - -0.1 1,416,074 + Rru_A1198 0.17 +1.9 1,416,074 + Rru_A1198 0.17 +0.7 1,416,400 + Rru_A1198 0.71 +0.3 1,416,400 + Rru_A1198 0.71 -0.8 1,416,401 - Rru_A1198 0.71 +0.8 1,416,432 + Rru_A1198 0.76 -2.7 1,416,432 + Rru_A1198 0.76 -0.1 1,416,432 + Rru_A1198 0.76 +1.5 1,416,433 - Rru_A1198 0.77 -1.5 1,416,440 - Rru_A1198 0.78 -1.8 1,416,584 + -0.4 1,416,584 + -3.4 1,416,584 + -1.9 1,416,584 + -0.4 1,416,585 - +0.0 1,416,680 + +0.2 1,416,681 - +0.6
Or see this region's nucleotide sequence