Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0942

Experiment: Hexanoic 21 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0941 and Rru_A0942 are separated by 347 nucleotidesRru_A0942 and Rru_A0943 are separated by 107 nucleotides Rru_A0941: Rru_A0941 - competence lipoprotein ComL, putative (NCBI), at 1,122,551 to 1,123,429 _A0941 Rru_A0942: Rru_A0942 - GreA/GreB family elongation factor (NCBI), at 1,123,777 to 1,124,187 _A0942 Rru_A0943: Rru_A0943 - UDP-3-0-acyl N-acetylglucosamine deacetylase (NCBI), at 1,124,295 to 1,125,338 _A0943 Position (kb) 1123 1124 1125Strain fitness (log2 ratio) -3 -2 -1 0 1at 1123.517 kb on - strandat 1123.517 kb on - strandat 1123.517 kb on - strandat 1123.733 kb on + strandat 1123.773 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
remove
1,123,517 - +0.1
1,123,517 - -0.7
1,123,517 - -2.0
1,123,733 + -1.6
1,123,773 - -3.2

Or see this region's nucleotide sequence