Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0817

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0816 and Rru_A0817 are separated by 507 nucleotidesRru_A0817 and Rru_A0818 overlap by 23 nucleotidesRru_A0818 and Rru_A0819 are separated by 662 nucleotides Rru_A0816: Rru_A0816 - hypothetical protein (NCBI), at 970,931 to 972,742 _A0816 Rru_A0817: Rru_A0817 - Transposase, mutator type (NCBI), at 973,250 to 973,960 _A0817 Rru_A0818: Rru_A0818 - hypothetical protein (NCBI), at 973,938 to 974,273 _A0818 Rru_A0819: Rru_A0819 - Asparagine synthase (NCBI), at 974,936 to 976,897 _A0819 Position (kb) 973 974Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 972.384 kb on + strand, within Rru_A0816at 972.384 kb on + strand, within Rru_A0816at 972.384 kb on + strand, within Rru_A0816at 972.385 kb on - strand, within Rru_A0816at 972.599 kb on + strandat 972.600 kb on - strandat 972.600 kb on - strandat 972.841 kb on - strandat 972.841 kb on - strandat 973.158 kb on - strandat 973.250 kb on - strandat 973.257 kb on - strandat 973.257 kb on - strandat 973.493 kb on + strand, within Rru_A0817at 973.493 kb on + strand, within Rru_A0817at 973.494 kb on - strand, within Rru_A0817at 973.711 kb on - strand, within Rru_A0817at 973.958 kb on + strandat 973.959 kb on - strandat 973.959 kb on - strandat 974.155 kb on + strand, within Rru_A0818at 974.155 kb on + strand, within Rru_A0818at 974.155 kb on + strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.528 kb on + strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.533 kb on - strandat 974.533 kb on - strandat 974.659 kb on + strandat 974.659 kb on + strandat 974.659 kb on + strandat 974.660 kb on - strandat 974.674 kb on - strandat 974.714 kb on + strandat 974.714 kb on + strandat 974.714 kb on + strandat 974.714 kb on + strandat 974.715 kb on - strandat 974.878 kb on + strandat 974.878 kb on + strandat 974.879 kb on - strandat 974.879 kb on - strandat 974.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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972,384 + Rru_A0816 0.80 +0.9
972,384 + Rru_A0816 0.80 -0.6
972,384 + Rru_A0816 0.80 +1.8
972,385 - Rru_A0816 0.80 -1.6
972,599 + +1.1
972,600 - -0.9
972,600 - +0.1
972,841 - +0.3
972,841 - +0.7
973,158 - +1.3
973,250 - -0.1
973,257 - -0.3
973,257 - -0.6
973,493 + Rru_A0817 0.34 +1.1
973,493 + Rru_A0817 0.34 +0.7
973,494 - Rru_A0817 0.34 +0.8
973,711 - Rru_A0817 0.65 +0.6
973,958 + -0.6
973,959 - +1.3
973,959 - +0.3
974,155 + Rru_A0818 0.65 +0.3
974,155 + Rru_A0818 0.65 +0.1
974,155 + Rru_A0818 0.65 -1.1
974,156 - Rru_A0818 0.65 -0.8
974,156 - Rru_A0818 0.65 -1.3
974,156 - Rru_A0818 0.65 -0.0
974,156 - Rru_A0818 0.65 +0.4
974,528 + +2.2
974,529 - +0.0
974,529 - -0.7
974,529 - -0.6
974,529 - -0.9
974,529 - -3.1
974,529 - -1.2
974,529 - -2.3
974,533 - +0.2
974,533 - -0.1
974,659 + +0.2
974,659 + -1.0
974,659 + -0.7
974,660 - -1.8
974,674 - -2.5
974,714 + +0.8
974,714 + +0.3
974,714 + -1.0
974,714 + +0.5
974,715 - -0.6
974,878 + -0.5
974,878 + -4.5
974,879 - -1.2
974,879 - +0.8
974,879 - +0.7

Or see this region's nucleotide sequence