Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0642 and Rru_A0643 are separated by 27 nucleotides Rru_A0643 and Rru_A0644 are separated by 83 nucleotides
Rru_A0642: Rru_A0642 - Protein of unknown function DUF185 (NCBI), at 763,615 to 764,709
_A0642
Rru_A0643: Rru_A0643 - Protein of unknown function DUF152 (NCBI), at 764,737 to 765,504
_A0643
Rru_A0644: Rru_A0644 - hypothetical protein (NCBI), at 765,588 to 766,616
_A0644
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.727 kb on - strand at 764.790 kb on + strand at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 765.148 kb on - strand, within Rru_A0643 at 765.192 kb on + strand, within Rru_A0643 at 765.232 kb on + strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.344 kb on - strand, within Rru_A0643 at 765.344 kb on - strand, within Rru_A0643 at 765.433 kb on + strand at 765.902 kb on - strand, within Rru_A0644 at 765.902 kb on - strand, within Rru_A0644
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 764,727 - -1.6 764,790 + -0.3 764,821 + Rru_A0643 0.11 +0.5 764,821 + Rru_A0643 0.11 -2.6 764,821 + Rru_A0643 0.11 -0.5 764,821 + Rru_A0643 0.11 -2.6 764,821 + Rru_A0643 0.11 -0.9 764,822 - Rru_A0643 0.11 +2.5 764,822 - Rru_A0643 0.11 -2.2 764,822 - Rru_A0643 0.11 -2.7 764,822 - Rru_A0643 0.11 -0.6 764,822 - Rru_A0643 0.11 -0.9 765,148 - Rru_A0643 0.54 -0.3 765,192 + Rru_A0643 0.59 -3.5 765,232 + Rru_A0643 0.64 -3.2 765,233 - Rru_A0643 0.65 -1.4 765,233 - Rru_A0643 0.65 -2.0 765,233 - Rru_A0643 0.65 +2.5 765,233 - Rru_A0643 0.65 +1.5 765,233 - Rru_A0643 0.65 -2.6 765,344 - Rru_A0643 0.79 -2.6 765,344 - Rru_A0643 0.79 +1.4 765,433 + -3.5 765,902 - Rru_A0644 0.31 -0.8 765,902 - Rru_A0644 0.31 -0.5
Or see this region's nucleotide sequence